Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021864X
(502 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21493| Best HMM Match : No HMM Matches (HMM E-Value=.) 125 2e-29
SB_3115| Best HMM Match : AAA (HMM E-Value=0) 39 0.003
SB_7424| Best HMM Match : AAA (HMM E-Value=0) 37 0.011
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 36 0.025
SB_26897| Best HMM Match : AAA (HMM E-Value=4.2e-12) 33 0.10
SB_35704| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.10
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_45627| Best HMM Match : AAA (HMM E-Value=0) 33 0.17
SB_33907| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_55690| Best HMM Match : AAA (HMM E-Value=0) 32 0.31
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_49367| Best HMM Match : AAA (HMM E-Value=0) 31 0.40
SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_732| Best HMM Match : AAA (HMM E-Value=0) 31 0.53
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_9909| Best HMM Match : AAA (HMM E-Value=0) 31 0.71
SB_46732| Best HMM Match : AAA (HMM E-Value=0.044) 31 0.71
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0) 31 0.71
SB_8256| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.93
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 30 1.2
SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_48561| Best HMM Match : AAA (HMM E-Value=0) 29 1.6
SB_10418| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08) 29 2.2
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_50373| Best HMM Match : HC2 (HMM E-Value=0.001) 29 2.8
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 28 3.8
SB_7605| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_21461| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_58373| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_33442| Best HMM Match : AAA (HMM E-Value=0) 28 5.0
SB_44052| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_56043| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_55554| Best HMM Match : AAA (HMM E-Value=0.022) 27 6.6
SB_41077| Best HMM Match : LRR_1 (HMM E-Value=1.8e-05) 27 6.6
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064) 27 6.6
SB_10590| Best HMM Match : DUF485 (HMM E-Value=7.3) 27 6.6
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13) 27 8.7
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22) 27 8.7
SB_1701| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_21493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 125 bits (302), Expect = 2e-29
Identities = 64/86 (74%), Positives = 76/86 (88%)
Frame = +3
Query: 243 KEGRGVILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLE 422
+ G+IL+MI+EGKIAGRAVL+AGQPGTGKTAIAMG+AQ+LGPDTPFTS+AGSEIFSLE
Sbjct: 152 RRAAGIILEMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAQSLGPDTPFTSIAGSEIFSLE 211
Query: 423 MSKTEALTQAIRKSIGIRIKEESEII 500
MSKTEALTQ +S+ + EE+EII
Sbjct: 212 MSKTEALTQP-SESL---LVEETEII 233
Score = 62.5 bits (145), Expect = 2e-10
Identities = 29/34 (85%), Positives = 31/34 (91%)
Frame = +1
Query: 154 GAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAA 255
GAHSHIRGLGLDD+LE RQVSQGMVGQ AR+AA
Sbjct: 122 GAHSHIRGLGLDDALEARQVSQGMVGQVTARRAA 155
>SB_3115| Best HMM Match : AAA (HMM E-Value=0)
Length = 913
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
+ LL G PGTGKT +A A A D PF SMAGS+ +
Sbjct: 159 KGALLVGPPGTGKTLLAK--AVATEADVPFLSMAGSDFVEM 197
>SB_7424| Best HMM Match : AAA (HMM E-Value=0)
Length = 294
Score = 36.7 bits (81), Expect = 0.011
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
+ +L+G PGTGKT +A +A G PF S++GSE +
Sbjct: 82 KGAILSGPPGTGKTLLAKAVAGEAG--VPFLSISGSEFLEM 120
>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 35.5 bits (78), Expect = 0.025
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
R VL+ G PGTGKT +A +A G T F +++ S + S ++E L + +
Sbjct: 284 RGVLMVGPPGTGKTMLAKAVATECG--TTFFNVSSSTLTSKYRGESEKLVRIL 334
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 35.5 bits (78), Expect = 0.025
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTE-ALTQAIRKS 464
+LLAG PG GKT +A +A G + F S+ G E+ ++ + ++E A+ Q +++
Sbjct: 20 ILLAGPPGCGKTLLAKAIANESGIN--FISVKGPELLNMYVGESERAVRQVFQRA 72
>SB_26897| Best HMM Match : AAA (HMM E-Value=4.2e-12)
Length = 230
Score = 33.5 bits (73), Expect = 0.10
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQALGPDTPFTSM 395
+L G PGTGKT+ + +A+ L PD F SM
Sbjct: 13 LLFYGPPGTGKTSTILAVAKQLYPDKQFGSM 43
>SB_35704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE 407
VLL G PGTGKT +A +A G PF +GSE
Sbjct: 167 VLLIGSPGTGKTLLAKAVAGEAG--VPFFFCSGSE 199
>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3511
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 291 AGRAVLLAGQPGTGKTAIAMGLAQALGPDT 380
A R VLL G GTGKT++A + Q L P T
Sbjct: 1753 AKRPVLLTGPVGTGKTSVAQKVLQKLDPKT 1782
>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
Length = 628
Score = 32.7 bits (71), Expect = 0.17
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +3
Query: 267 QMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEA 440
+ ++ G + VL G PG GKT +A +A F S+ G E+ ++ ++EA
Sbjct: 335 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QANFISIKGPELLTMWFGESEA 390
>SB_33907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
+LLAG PG GKT +A +A G + F S+ G E+ ++
Sbjct: 20 ILLAGPPGCGKTLLAKAIANESGIN--FISVKGPELLNM 56
>SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 410
+ V+L GQPGTGKT +A +A F + GSE+
Sbjct: 415 KGVILYGQPGTGKTLLAKAVANQ--TSATFLRVVGSEL 450
>SB_55690| Best HMM Match : AAA (HMM E-Value=0)
Length = 1031
Score = 31.9 bits (69), Expect = 0.31
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAIR 458
+LL G PGTGKT +A +A+ G + F S+ G E+ S + +E QA+R
Sbjct: 704 LLLYGPPGTGKTLLAGVVAKECGLN--FISIKGPELLSKYIGASE---QAVR 750
>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 31.9 bits (69), Expect = 0.31
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTE 437
VLL G PGTGKT +A +A + F S+ G E+ ++ + ++E
Sbjct: 847 VLLYGPPGTGKTLMAKAVATECSLN--FLSVKGPELINMYVGQSE 889
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQAL 368
VLL G PGTGK AI M ++ L
Sbjct: 546 VLLTGLPGTGKRAICMAVSSQL 567
>SB_49367| Best HMM Match : AAA (HMM E-Value=0)
Length = 976
Score = 31.5 bits (68), Expect = 0.40
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +3
Query: 306 LLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFS 416
LL G PG GKT +A +A L + PF +A +EI S
Sbjct: 714 LLHGPPGCGKTLLAHAIAGEL--EMPFLKLAATEIVS 748
>SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 31.1 bits (67), Expect = 0.53
Identities = 17/65 (26%), Positives = 35/65 (53%)
Frame = +3
Query: 279 EGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAIR 458
+G + R + + G PG+GKT +A LA++ G T ++ ++ E +K + +
Sbjct: 99 KGLLNARVIFVIGGPGSGKTELAKLLAESSGR----THISMGQLLKEEATKDTDRAREVA 154
Query: 459 KSIGI 473
++IG+
Sbjct: 155 RAIGM 159
>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 31.1 bits (67), Expect = 0.53
Identities = 22/94 (23%), Positives = 43/94 (45%)
Frame = +3
Query: 201 AKTSIAGHGRPEDGKEGRGVILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDT 380
AK I G G +DGK+GRG +Q++ G+ L+ G P A+ + Q +
Sbjct: 138 AKIMIRGKGSIKDGKQGRGRDMQLMNSGEDEPLHALVTG-PTAESVKKAVNMIQDILKQG 196
Query: 381 PFTSMAGSEIFSLEMSKTEALTQAIRKSIGIRIK 482
+++ +++ + AL +R+ +R +
Sbjct: 197 IEAPEGQNDLKRMQLRELAALNGTLREDELLRCR 230
>SB_732| Best HMM Match : AAA (HMM E-Value=0)
Length = 388
Score = 31.1 bits (67), Expect = 0.53
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEA 440
+ +LL G PGTGKT +A + L P ++G E+ + + ++EA
Sbjct: 183 KGILLFGPPGTGKTLMARQIGTMLNTREP-KIISGPEVLNKFVGESEA 229
>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 31.1 bits (67), Expect = 0.53
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 410
+ VLL G PGTGKT +A +A + F ++GSE+
Sbjct: 212 KGVLLYGPPGTGKTLLARAVAH--HTECTFIRVSGSEL 247
>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
Length = 400
Score = 30.7 bits (66), Expect = 0.71
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 410
+ VLL G PGTGKT A +A D F + GSE+
Sbjct: 119 KGVLLFGPPGTGKTLCARAVANR--TDACFIRVIGSEL 154
>SB_46732| Best HMM Match : AAA (HMM E-Value=0.044)
Length = 430
Score = 30.7 bits (66), Expect = 0.71
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 410
R +L G PGTGKT A LA+ G D + M G ++
Sbjct: 330 RNLLFYGPPGTGKTMFAKSLARHSGMD--YAVMTGGDV 365
>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 2065
Score = 30.7 bits (66), Expect = 0.71
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALG 371
R +LL G PG GKT++ +A+A G
Sbjct: 1618 RPILLEGSPGVGKTSLVSAIAKASG 1642
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 291 AGRAVLLAGQPGTGKTAIAMGLAQALGPDTP 383
AG VLL G G+GKT + +A G TP
Sbjct: 117 AGSGVLLEGPVGSGKTCLVEHVASMCGRSTP 147
>SB_8256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 30.3 bits (65), Expect = 0.93
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 326 YREDCHRYGISTSSGTGHTIYEHGRF 403
++ DC R G S+ GH + EHGR+
Sbjct: 153 FKHDCVRVGSSSKCFCGHLLSEHGRY 178
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -1
Query: 250 PSLPSSGRPCPAILVLAPKSHLSPVL*CGSARQFSR 143
P LP RP P+I V +P LSP+ GS+ SR
Sbjct: 299 PPLPDGLRPVPSIRVPSPAPSLSPLSSSGSSTPGSR 334
>SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2047
Score = 29.9 bits (64), Expect = 1.2
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Frame = +3
Query: 255 GVILQMIREGKIAGRAVLLAGQPGTGKTA-IAMGLAQALGPDTPFTSMAGSE--IFSLEM 425
G +L + E KI+ + V++ G PG+GK++ +A + L ++ + + G I S
Sbjct: 426 GKLLNTMDENKIS-KGVIITGDPGSGKSSFVANIICSQLSNNSMHSHILGYHMCIQSHRN 484
Query: 426 SKTEA-LTQAIRKSIGIRIKEESEII 500
+K A L + + I RI+E S++I
Sbjct: 485 TKDPAKLVRNLAAMIASRIQEYSDLI 510
>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
Length = 2021
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLA 359
R VL G PGTGKT +A LA
Sbjct: 919 RGVLFFGPPGTGKTLVARALA 939
>SB_10418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQ 449
+ LL G PG GKT +A +AQ G + + + + K E TQ
Sbjct: 381 KVALLCGPPGLGKTTLAHVIAQHAGYNVVEMNASDDRAVEVFRQKIEVATQ 431
>SB_59437| Best HMM Match : AAA (HMM E-Value=7.4e-08)
Length = 568
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALG 371
+A LL+G PG GKT A + Q LG
Sbjct: 272 KAALLSGPPGVGKTTTATLVCQELG 296
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 288 IAGRAVLLAGQPGTGKTA-IAMGLAQALGPDTPFTSMAGSEIF-SLEMSKTEALTQAIRK 461
++ R V+ Q GTGKTA A+ + Q + DT + G + +L ++ T L Q I+K
Sbjct: 120 LSARDVIAQAQSGTGKTATFAISILQEI--DTNYKDKNGCDCCQALVLAPTRELAQQIQK 177
Query: 462 SI 467
+
Sbjct: 178 VV 179
>SB_50373| Best HMM Match : HC2 (HMM E-Value=0.001)
Length = 382
Score = 28.7 bits (61), Expect = 2.8
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = +3
Query: 201 AKTSIAGHGRPEDGKEGRGVILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDT 380
A +AG G G G+GV + + +AG+ V AG+ GK G+A G +
Sbjct: 37 AGKGVAGKGVAGKGVAGKGVAGKEMTGKGVAGKGV--AGKGVAGKGVTGKGVA---GKEM 91
Query: 381 PFTSMAGSEIFSLEMS 428
+AG E+ EM+
Sbjct: 92 TGKGVAGKEMTGKEMT 107
>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/95 (17%), Positives = 38/95 (40%)
Frame = +3
Query: 216 AGHGRPEDGKEGRGVILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSM 395
A G G + G+++ R+G + ++ A +A+ G P T++
Sbjct: 268 AHFGSSSSGAQATGIMVSTHRDGALNHWQLVFADDSSFSTVVSISHIARRCGHRYPITTI 327
Query: 396 AGSEIFSLEMSKTEALTQAIRKSIGIRIKEESEII 500
L +S + + + +R + R + E E++
Sbjct: 328 LAHPELPLLLSTSSHVLEGMRTELNTRDEVEGEVL 362
>SB_14419| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 543
Score = 28.3 bits (60), Expect = 3.8
Identities = 21/80 (26%), Positives = 35/80 (43%)
Frame = +3
Query: 255 GVILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKT 434
G+++Q + + GR LA G+GKT IA+ + + T G F + +
Sbjct: 223 GIVVQT-GDNTVMGRIAGLASGLGSGKTPIAIEIGHFIHIITGVAVALGVTFFIISLVLG 281
Query: 435 EALTQAIRKSIGIRIKEESE 494
+ QA+ IGI + E
Sbjct: 282 YTILQAVIFLIGIIVANVPE 301
>SB_7605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 667
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 322 G*PANNTARPAILPSRIICKMTPRPSLPSSGRPCPAILVLAPKSH 188
G PA ++ RPA L + CK+ RP P P +L K H
Sbjct: 303 GHPALSSVRPAALVTYSACKVQTRPKGLGRVAPKPRLLARYNKPH 347
>SB_21461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -1
Query: 331 PVPG*PANNTARPAILPSRIICKMTPRPSLPSSGRPCP 218
P+PG P NT P P P P+ P G P P
Sbjct: 58 PIPGNPPPNTPIPGDPPPNTPIPGDPPPNTPIPGNPPP 95
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -1
Query: 331 PVPG*PANNTARPAILPSRIICKMTPRPSLPSSGRPCP 218
P+PG P NT P P P P+ P G P P
Sbjct: 68 PIPGDPPPNTPIPGDPPPNTPIPGNPPPNTPIPGDPPP 105
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -1
Query: 331 PVPG*PANNTARPAILPSRIICKMTPRPSLPSSGRPCP 218
P+PG P NT P P P P+ P G P P
Sbjct: 78 PIPGDPPPNTPIPGNPPPNTPIPGDPPPNTPIPGDPPP 115
>SB_58373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQALG 371
+L+ G PGTGK+ + LA LG
Sbjct: 11 ILITGTPGTGKSTTGVELANRLG 33
>SB_33442| Best HMM Match : AAA (HMM E-Value=0)
Length = 369
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE 407
R VLL G PG GKT +A +A F + GSE
Sbjct: 199 RGVLLYGPPGCGKTMLAKAVAH--HTTAAFIRVVGSE 233
>SB_44052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 331 PVPG*PANNTARPAILPSRIICKMTPRPSLPSSGRPCPA 215
P P P + T + PS IC TPR PS+ RP P+
Sbjct: 131 PAPK-PKDTTKAIDLAPSEYICGDTPR--RPSAARPAPS 166
>SB_56043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 291 AGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI--FSLE 422
AG+ V + G G+GK+ I L + P +AG +I FSLE
Sbjct: 436 AGKKVAIVGGSGSGKSTIVRLLFRFFDPQGGRVLVAGQDIRDFSLE 481
>SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)
Length = 1681
Score = 27.5 bits (58), Expect = 6.6
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 294 GRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAIR-KSIG 470
G VLL GQ GTGK+A+ + + P P+ S IF + +AI K +
Sbjct: 922 GYPVLLVGQSGTGKSALIQNM---VSPRYPY-----SRIFMAASLSSRLFQEAIEAKLVV 973
Query: 471 IRIKEESEI 497
+R +E + +
Sbjct: 974 LRQRENAHL 982
>SB_41077| Best HMM Match : LRR_1 (HMM E-Value=1.8e-05)
Length = 1200
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 291 AGRAVLLAGQPGTGKTAIAMGLAQALGPDTP 383
AG+ +LL G+ G GKT + L ++L TP
Sbjct: 366 AGKHLLLKGKAGVGKTFLTHKLKESLVVGTP 396
>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
Length = 1064
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 234 EDGKEGRGVILQMIREGKIAGRAVLLAGQPGTGKT 338
ED +E R ++ +++ G L+ G PGTGKT
Sbjct: 532 EDNQEQRQAVVSIVK-GTSRPHPYLIFGPPGTGKT 565
>SB_10590| Best HMM Match : DUF485 (HMM E-Value=7.3)
Length = 270
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 304 TARPAILPSRIICKMTPRPSLPSSGRP 224
T P ILP+R +C PSLPS G P
Sbjct: 92 TVMPTILPARSLCDW---PSLPSVGWP 115
>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
Length = 3035
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -3
Query: 437 LSFTHFQREYLRTGHARKWCVRSQSLC*SHSDGSLPCTRLTGQ*HCSS 294
L+F Q RT WC Q LC S + + C + + +CSS
Sbjct: 1224 LNFLRVQIPENRTSKILNWCSDYQRLCESFALSPIQCVQPSTPYNCSS 1271
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 27.1 bits (57), Expect = 8.7
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +3
Query: 237 DGKEGRGVILQMIREGKIAGRAVLLAGQPGTGKTA-IAMGLAQALGPDTPFTSMAGSEIF 413
+G E I Q + + GR V+ Q GTGKTA ++ + QA+ DT E
Sbjct: 15 EGFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAI--DTQL-----REPQ 67
Query: 414 SLEMSKTEALTQAIRKSI 467
+L +S T L I+K +
Sbjct: 68 ALVLSPTRELANQIQKVV 85
>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
Length = 455
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQAL 368
VLL G PG GKT + + QAL
Sbjct: 54 VLLTGPPGIGKTTLCSKVKQAL 75
>SB_1701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 27.1 bits (57), Expect = 8.7
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +3
Query: 255 GVILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKT 434
G +Q + G + GRAV+ G G A+AM LA +G + S+A + L ++
Sbjct: 137 GGAVQAVVPGGV-GRAVVTGGAVRAGAHAVAMPLAGGVGSASAGLSVASASA-GLSVASA 194
Query: 435 EALTQAIRKSIGIRI 479
A S G+ +
Sbjct: 195 SAGLSVAGASAGLSV 209
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,097,138
Number of Sequences: 59808
Number of extensions: 329511
Number of successful extensions: 1296
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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