Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021864X
(502 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-... 140 4e-34
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel... 134 3e-32
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 103 9e-23
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 40 0.001
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 40 0.001
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 39 0.002
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ... 39 0.002
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 38 0.003
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 38 0.003
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ... 38 0.004
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 38 0.004
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 38 0.004
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 38 0.005
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 37 0.007
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 37 0.009
At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1... 36 0.012
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 36 0.012
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 36 0.015
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 36 0.015
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 36 0.020
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 35 0.027
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 35 0.027
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 35 0.035
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 35 0.035
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 35 0.035
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 34 0.047
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1... 34 0.062
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 34 0.062
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 34 0.062
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 33 0.11
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1... 33 0.11
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 33 0.14
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 33 0.14
At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transport... 33 0.14
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 33 0.14
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 33 0.14
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 32 0.19
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 32 0.19
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 32 0.19
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 32 0.19
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 32 0.19
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 32 0.25
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 32 0.25
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 32 0.25
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 32 0.25
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 32 0.25
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 32 0.25
At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transport... 32 0.25
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 32 0.25
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 32 0.25
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 32 0.25
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 32 0.25
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 32 0.25
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 32 0.25
At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein, pu... 32 0.25
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 31 0.33
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 31 0.33
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 31 0.33
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 31 0.44
At1g73170.1 68414.m08466 expressed protein 31 0.44
At1g02530.1 68414.m00204 multidrug resistance P-glycoprotein, pu... 31 0.44
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 31 0.58
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 31 0.58
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 31 0.58
At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein, pu... 31 0.58
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 31 0.58
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 31 0.58
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 30 0.76
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 30 0.76
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d... 30 0.76
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 30 0.76
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 30 0.76
At3g45450.1 68416.m04908 Clp amino terminal domain-containing pr... 30 0.76
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 30 0.76
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 30 0.76
At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial (... 30 1.0
At4g25960.1 68417.m03735 multidrug resistance P-glycoprotein, pu... 30 1.0
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 30 1.0
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 30 1.0
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 30 1.0
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 30 1.0
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 29 1.3
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 29 1.3
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 29 1.3
At5g04970.1 68418.m00526 pectinesterase, putative contains simil... 29 1.3
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 29 1.3
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 29 1.3
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 29 1.3
At1g33290.2 68414.m04118 sporulation protein-related isoform con... 29 1.3
At1g33290.1 68414.m04117 sporulation protein-related isoform con... 29 1.3
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 29 1.3
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 29 1.8
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 29 1.8
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 29 1.8
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ... 29 2.3
At5g46540.1 68418.m05730 ABC transporter family protein contains... 29 2.3
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 29 2.3
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 29 2.3
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s... 29 2.3
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 29 2.3
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 29 2.3
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 28 3.1
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 28 3.1
At4g01820.1 68417.m00239 multidrug resistance P-glycoprotein, pu... 28 3.1
At3g10420.2 68416.m01250 sporulation protein-related similar to ... 28 3.1
At3g10420.1 68416.m01249 sporulation protein-related similar to ... 28 3.1
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 28 3.1
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 28 4.1
At4g39540.2 68417.m05591 shikimate kinase family protein similar... 28 4.1
At4g39540.1 68417.m05590 shikimate kinase family protein similar... 28 4.1
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 4.1
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 28 4.1
At4g14700.1 68417.m02259 replication control protein, putative s... 28 4.1
At4g12620.1 68417.m01988 replication control protein, putative s... 28 4.1
At5g66005.2 68418.m08311 Expressed protein 27 5.4
At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing... 27 5.4
At5g50340.1 68418.m06235 DNA repair protein-related similar to R... 27 5.4
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 27 5.4
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 27 5.4
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 27 5.4
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 27 5.4
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 27 5.4
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 27 5.4
At1g15520.1 68414.m01867 ABC transporter family protein similar ... 27 5.4
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 27 7.1
At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR... 27 7.1
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 27 7.1
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 27 7.1
At3g54640.1 68416.m06045 tryptophan synthase, alpha subunit (TSA... 27 7.1
At3g28790.1 68416.m03593 expressed protein 27 7.1
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 27 7.1
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 27 7.1
At4g19210.1 68417.m02834 RNase L inhibitor protein, putative sim... 27 9.4
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 27 9.4
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 27 9.4
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 27 9.4
>At5g67630.1 68418.m08527 DNA helicase, putative similar to
RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
reptin [Drosophila melanogaster] GI:7243682
Length = 469
Score = 140 bits (340), Expect = 4e-34
Identities = 66/86 (76%), Positives = 80/86 (93%)
Frame = +3
Query: 243 KEGRGVILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLE 422
++ GVILQMIREGKIAGRA+L+AGQPGTGKTAIAMG+A++LG +TPF +AGSEIFSLE
Sbjct: 49 RKAAGVILQMIREGKIAGRAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLE 108
Query: 423 MSKTEALTQAIRKSIGIRIKEESEII 500
MSKTEALTQ+ RK+IG+RIKEE+E+I
Sbjct: 109 MSKTEALTQSFRKAIGVRIKEETEVI 134
Score = 77.8 bits (183), Expect = 4e-15
Identities = 36/52 (69%), Positives = 43/52 (82%)
Frame = +1
Query: 100 IAAAQVQEVRSITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAA 255
+A ++ E R +TR+ERIGAHSHIRGLGLD +LEPR VS+GMVGQ ARKAA
Sbjct: 1 MAELKLSESRDLTRVERIGAHSHIRGLGLDSALEPRAVSEGMVGQVKARKAA 52
>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
helicase GI:4521249 from [Mus musculus]
Length = 473
Score = 134 bits (324), Expect = 3e-32
Identities = 61/86 (70%), Positives = 79/86 (91%)
Frame = +3
Query: 243 KEGRGVILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLE 422
++ GV L++IR+GKI+GRA+L+AGQPGTGK AIAMG+A++LG +TPFT +AGSEIFSLE
Sbjct: 49 RKAAGVTLELIRDGKISGRAILIAGQPGTGKIAIAMGIAKSLGQETPFTMIAGSEIFSLE 108
Query: 423 MSKTEALTQAIRKSIGIRIKEESEII 500
MSKTEALTQA RK+IG+RIKEE+++I
Sbjct: 109 MSKTEALTQAFRKAIGVRIKEETDVI 134
Score = 77.4 bits (182), Expect = 5e-15
Identities = 37/52 (71%), Positives = 42/52 (80%)
Frame = +1
Query: 100 IAAAQVQEVRSITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAA 255
+A ++ E R +TRIERIGAHSHIRGLGLD LEPR VS+GMVGQ ARKAA
Sbjct: 1 MAELRLSETRDLTRIERIGAHSHIRGLGLDSVLEPRAVSEGMVGQIKARKAA 52
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 103 bits (246), Expect = 9e-23
Identities = 44/87 (50%), Positives = 66/87 (75%)
Frame = +3
Query: 237 DGKEGRGVILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFS 416
+ +E G+++ MI++ K+AG+A+LLAG PGTGKTA+A+G++Q LG PF M GSE++S
Sbjct: 47 EAREAAGLVVDMIKQKKMAGKALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEVYS 106
Query: 417 LEMSKTEALTQAIRKSIGIRIKEESEI 497
E+ KTE L + R++IG+RIKE E+
Sbjct: 107 SEVKKTEVLMENFRRAIGLRIKETKEV 133
Score = 47.2 bits (107), Expect = 6e-06
Identities = 20/48 (41%), Positives = 35/48 (72%)
Frame = +1
Query: 112 QVQEVRSITRIERIGAHSHIRGLGLDDSLEPRQVSQGMVGQKMARKAA 255
+++E++S + +RI H+HI+GLGL+ + P +++ G VGQ AR+AA
Sbjct: 5 KIEEIQSTAKKQRIATHTHIKGLGLEPTGIPIKLAAGFVGQLEAREAA 52
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
+ +LL G PGTGKT +A LA G + F S+ GS + S E LT+A+
Sbjct: 186 KGILLFGPPGTGKTLLAKALATEAGAN--FISITGSTLTSKWFGDAEKLTKAL 236
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
+ +LL G PGTGKT +A LA G + F S+ GS + S E LT+A+
Sbjct: 387 KGILLFGPPGTGKTLLAKALATEAGAN--FISITGSTLTSKWFGDAEKLTKAL 437
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
+ VLL G PGTGKT +A +A G PF S++GSE +
Sbjct: 257 KGVLLTGPPGTGKTLLAKAIAGEAG--VPFFSLSGSEFIEM 295
>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
subunit / ClpC almost identical to ClpC GI:2921158 from
[Arabidopsis thaliana]; contains Pfam profile PF02861:
Clp amino terminal domain; contains Pfam profile
PF00004: ATPase, AAA family; contains Pfam profile
PF02151: UvrB/uvrC motif
Length = 929
Score = 38.7 bits (86), Expect = 0.002
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 309 LAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIFSLEMSKTEALTQAIRKSIGIRIKE 485
L G+PG GKTAIA GLAQ + D P T + G ++ +L+M A T+ R R+K+
Sbjct: 300 LIGEPGVGKTAIAEGLAQRIASGDVPET-IEGKKVITLDMGLLVAGTK-YRGEFEERLKK 357
Query: 486 ESEII 500
E I
Sbjct: 358 LMEEI 362
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 38.3 bits (85), Expect = 0.003
Identities = 22/49 (44%), Positives = 26/49 (53%)
Frame = +3
Query: 273 IREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
+R G R VLL G PGTGKT +A +A D PF S + SE L
Sbjct: 355 VRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--SDVPFISCSASEFVEL 401
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
+ VLL G PGTGKT +A +A G PF S++GSE +
Sbjct: 254 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEM 292
>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
subunit (ClpC) identical to AtClpC GI:5360574 from
[Arabidopsis thaliana]; contains Pfam profiles PF02861:
Clp amino terminal domain and PF02151: UvrB/uvrC motif
Length = 952
Score = 37.9 bits (84), Expect = 0.004
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 309 LAGQPGTGKTAIAMGLAQALGP-DTPFTSMAGSEIFSLEMSKTEALTQAIRKSIGIRIKE 485
L G+PG GKTAIA GLAQ + D P T + G + +L+M A T+ R R+K+
Sbjct: 321 LIGEPGVGKTAIAEGLAQRIASGDVPET-IEGKTVITLDMGLLVAGTK-YRGEFEERLKK 378
Query: 486 ESEII 500
E I
Sbjct: 379 LMEEI 383
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEA 440
R VLL G PGTGKT +A +A G PF S++ SE L + + A
Sbjct: 368 RGVLLVGPPGTGKTLLARAVAGEAG--VPFFSVSASEFVELFVGRGAA 413
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
+ VLL G PGTGKT +A +A G PF S++GSE +
Sbjct: 261 KGVLLIGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEM 299
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 37.5 bits (83), Expect = 0.005
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +3
Query: 282 GKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE 407
GK+ + VLL G PGTGKT +A +A G PF S +GSE
Sbjct: 257 GKLP-KGVLLVGPPGTGKTMLARAIAGEAG--VPFFSCSGSE 295
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 37.1 bits (82), Expect = 0.007
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMS 428
R VLL+G PGTGKT A LA+ G PF +G+E E S
Sbjct: 527 RGVLLSGPPGTGKTLFARTLAKESG--LPFVFASGAEFTDSEKS 568
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 36.7 bits (81), Expect = 0.009
Identities = 21/49 (42%), Positives = 26/49 (53%)
Frame = +3
Query: 273 IREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
+R G R VLL G PGTGKT +A +A + PF S + SE L
Sbjct: 351 VRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--AEVPFISCSASEFVEL 397
>At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101,
putative similar to heat shock protein 101 GI:6715468
GB:AAF26423 from [Arabidopsis thaliana]
Length = 623
Score = 36.3 bits (80), Expect = 0.012
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 306 LLAGQPGTGKTAIAMGLAQ-ALGPDTPFTSMAGSEIFSLEMSKTEALTQAIRKSIGIRIK 482
+L G+PG GKTA+ GLAQ L D P ++ G ++ SLE A T +R R+K
Sbjct: 169 VLIGEPGVGKTAVVEGLAQRILKGDVPI-NLTGVKLISLEFGAMVAGT-TLRGQFEERLK 226
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 36.3 bits (80), Expect = 0.012
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTE-ALTQAIRKS 464
+ VL+ G PGTGKT++A A+ G + F S+ G EI S + ++E AL + R +
Sbjct: 419 KGVLIHGPPGTGKTSLARTFARHSGVN--FFSVNGPEIISQYLGESEKALDEVFRSA 473
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 35.9 bits (79), Expect = 0.015
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +3
Query: 282 GKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE 407
GK+ + +LL G PGTGKT +A +A G PF AGSE
Sbjct: 392 GKLP-KGILLTGAPGTGKTLLAKAIAGEAG--VPFFYRAGSE 430
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 35.9 bits (79), Expect = 0.015
Identities = 19/35 (54%), Positives = 21/35 (60%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE 407
VLL G PG GKT +A +A G PF MAGSE
Sbjct: 466 VLLEGPPGCGKTLVAKAIAGEAG--VPFYQMAGSE 498
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 35.5 bits (78), Expect = 0.020
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEAL 443
RA LL G PGTGK+ +A A A D+ F S++ S++ S M ++E L
Sbjct: 166 RAFLLYGPPGTGKSYLAK--AVATEADSTFFSVSSSDLVSKWMGESEKL 212
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 35.1 bits (77), Expect = 0.027
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEAL 443
R +LL G PG KT +A A A F S++ +E+FS+ + + EAL
Sbjct: 321 RGILLHGPPGCSKTTLAKAAANAA--QASFFSLSCAELFSMYVGEGEAL 367
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQ-------ALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
R +LL G PGTGKT++ + Q L P + + AG L + EA + A+
Sbjct: 57 RGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEASSHAV 116
Query: 456 RKSIGIRIKEESEII 500
+ +E +++
Sbjct: 117 SDKPSVIFIDEIDVL 131
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 35.1 bits (77), Expect = 0.027
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQA---LGPDTPFTSMAGSEIFSLEMSKTE 437
R VLL G PGTGKT IA LA A G F G+++ S + + E
Sbjct: 416 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAE 465
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 34.7 bits (76), Expect = 0.035
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
+ LL G PGTGKT +A +A G PF S A SE L
Sbjct: 284 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASEFVEL 322
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 34.7 bits (76), Expect = 0.035
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
+ LL G PGTGKT +A A G PF S++GS+ +
Sbjct: 356 KGALLVGPPGTGKTLLAKATAGESG--VPFLSISGSDFMEM 394
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 34.7 bits (76), Expect = 0.035
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
+ LL G PGTGKT +A +A G PF S A SE L
Sbjct: 296 KGCLLVGPPGTGKTLLARAVAGEAG--VPFFSCAASEFVEL 334
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 34.3 bits (75), Expect = 0.047
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 267 QMIREGKIAG--RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEA 440
++ GK+ G + VLL G PGTGKT +A +A+ G F ++ S + S +
Sbjct: 108 ELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESG--AVFINVRVSNLMSKWFGDAQK 165
Query: 441 LTQAI 455
L A+
Sbjct: 166 LVSAV 170
>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 968
Score = 33.9 bits (74), Expect = 0.062
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 306 LLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEM 425
+L G+PG GKTAI+ GLAQ + ++ ++ SL+M
Sbjct: 279 VLIGEPGVGKTAISEGLAQRIVQGDVPQALMNRKLISLDM 318
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 33.9 bits (74), Expect = 0.062
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALG-------PDTPFTSMAGSEIFSLEMSKTEALTQAI 455
R +LL G PGTGKT++ LAQ L P + +FS S++ L +
Sbjct: 203 RIILLHGPPGTGKTSLCKALAQKLSIRCNSRYPHCQLIEVNAHSLFSKWFSESGKLVAKL 262
Query: 456 RKSIGIRIKEESEII 500
+ I ++E+ ++
Sbjct: 263 FQKIQEMVEEDGNLV 277
>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
to heat shock protein 101 GI:6715468 GB:AAF26423 from
[Arabidopsis thaliana]
Length = 911
Score = 33.9 bits (74), Expect = 0.062
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 306 LLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEM 425
+L G+PG GKTA+ GLAQ + S+ + SL+M
Sbjct: 204 VLIGEPGVGKTAVVEGLAQRIVKGDVPNSLTDVRLISLDM 243
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 33.1 bits (72), Expect = 0.11
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 267 QMIREGKIAG--RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEA 440
++ GK+ G + VLL G PGTGKT +A +A+ + F ++ S + S +
Sbjct: 111 ELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAIARE--SEAVFINVKVSNLMSKWFGDAQK 168
Query: 441 LTQAI 455
L A+
Sbjct: 169 LVSAV 173
>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 964
Score = 33.1 bits (72), Expect = 0.11
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 306 LLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEM 425
++ G+PG GKTAIA GLAQ + + ++ SL+M
Sbjct: 284 VIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDM 323
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 32.7 bits (71), Expect = 0.14
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 410
+ VLL G PGTGKT +A +A D F ++GSE+
Sbjct: 196 KGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSEL 231
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 32.7 bits (71), Expect = 0.14
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 410
+ VLL G PGTGKT +A +A D F ++GSE+
Sbjct: 196 KGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSEL 231
>At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transporter,
putative similar to multidrug-resistant protein CjMDR1
[Coptis japonica] GI:14715462, MDR-like p-glycoprotein
[Arabidopsis thaliana] GI:24324262; contains Pfam
profiles PF00005: ABC transporter, PF00664: ABC
transporter transmembrane region
Length = 1286
Score = 32.7 bits (71), Expect = 0.14
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 291 AGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEM 425
AG+ V L G+ G+GK+ + L + PD+ ++ G EI SL +
Sbjct: 1069 AGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGVEIKSLRL 1113
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 32.7 bits (71), Expect = 0.14
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
R +LL G PGTGKT +A +A+ G F +++ S I S + E +A+
Sbjct: 556 RGILLFGPPGTGKTMLAKAIAKEAG--ASFINVSMSTITSKWFGEDEKNVRAL 606
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 32.7 bits (71), Expect = 0.14
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
R +LL G PGTGKT +A +A+ G F +++ S I S + E +A+
Sbjct: 551 RGILLFGPPGTGKTMLAKAIAKEAG--ASFINVSMSTITSKWFGEDEKNVRAL 601
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 32.3 bits (70), Expect = 0.19
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Frame = +3
Query: 261 ILQMIREGKIAG----RAVLLAGQPGTGKTAIAMGLAQAL 368
IL+ I G++ G + + L+G PG GKT+I +A+AL
Sbjct: 442 ILEFIAVGRLRGTSQGKIICLSGPPGVGKTSIGRSIARAL 481
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 32.3 bits (70), Expect = 0.19
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Frame = +3
Query: 261 ILQMIREGKIAG----RAVLLAGQPGTGKTAIAMGLAQAL 368
IL+ I G++ G + + L+G PG GKT+I +A+AL
Sbjct: 425 ILEFIAVGRLRGTSQGKIICLSGPPGVGKTSIGRSIARAL 464
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 32.3 bits (70), Expect = 0.19
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
R +LL G PGTGKT A LA+ G D + M G ++ L
Sbjct: 398 RNILLHGPPGTGKTMAARELARKSGLD--YALMTGGDVAPL 436
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 32.3 bits (70), Expect = 0.19
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
+ LL G PGTGKT +A A A PF S++GS+ +
Sbjct: 361 KGALLVGPPGTGKTLLAK--ATAGESAVPFLSISGSDFMEM 399
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 32.3 bits (70), Expect = 0.19
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTE 437
VLL G PGTGKT +A +A + F S+ G E+ ++ + ++E
Sbjct: 694 VLLYGPPGTGKTLLAKAVATECSLN--FLSVKGPELINMYIGESE 736
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 31.9 bits (69), Expect = 0.25
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 279 EGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
+G + VLL G PGTGKT +A +A G PF + G++ +
Sbjct: 344 KGIYCPKGVLLHGPPGTGKTLLAKAIAGEAG--LPFFAANGTDFVEM 388
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 31.9 bits (69), Expect = 0.25
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 282 GKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
G + VL G PG GKT +A +A F S+ G E+ ++ ++EA + I
Sbjct: 510 GMSPSKGVLFYGPPGCGKTLLAKAIANEC--QANFISVKGPELLTMWFGESEANVREI 565
Score = 30.7 bits (66), Expect = 0.58
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEA 440
+ +LL G PG+GKT IA +A G F + G EI S ++E+
Sbjct: 242 KGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMSKLAGESES 287
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 31.9 bits (69), Expect = 0.25
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 410
+ V+L G+PGTGKT +A +A + F + GSE+
Sbjct: 223 KGVILYGEPGTGKTLLAKAVANS--TSATFLRVVGSEL 258
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 31.9 bits (69), Expect = 0.25
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
R +LL G PGTGKT +A +A G F +++ S I S + E +A+
Sbjct: 449 RGILLFGPPGTGKTMMAKAIANEAG--ASFINVSMSTITSKWFGEDEKNVRAL 499
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
profile PF00004: ATPase, AAA family
Length = 1122
Score = 31.9 bits (69), Expect = 0.25
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
+ +LL G PGTGKT +A +A+ D F +++ S I S + E +A+
Sbjct: 856 KGILLFGPPGTGKTMLAKAVAKE--ADANFINISMSSITSKWFGEGEKYVKAV 906
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 31.9 bits (69), Expect = 0.25
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
+ +LL G PGTGKT +A +A G + F +++ S I S + E +A+
Sbjct: 999 KGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITSKWFGEGEKYVKAV 1049
>At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transporter,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]; contains Pfam
profiles PF00005: ABC transporter, PF00664: ABC
transporter transmembrane region
Length = 1292
Score = 31.9 bits (69), Expect = 0.25
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +3
Query: 291 AGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEM 425
AG+ + L G+ G+GK+ + L + PD+ ++ G EI +L++
Sbjct: 1075 AGKTIALVGESGSGKSTVIALLQRFYDPDSGQITLDGVEIKTLQL 1119
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 31.9 bits (69), Expect = 0.25
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 282 GKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
G + VL G PG GKT +A +A F S+ G E+ ++ ++EA + I
Sbjct: 511 GMSPSKGVLFYGPPGCGKTLLAKAIANEC--QANFISIKGPELLTMWFGESEANVREI 566
Score = 30.7 bits (66), Expect = 0.58
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEA 440
+ +LL G PG+GKT IA +A G F + G EI S ++E+
Sbjct: 243 KGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMSKLAGESES 288
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 31.9 bits (69), Expect = 0.25
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 282 GKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
G + VL G PG GKT +A +A F S+ G E+ ++ ++EA + I
Sbjct: 510 GMSPSKGVLFYGPPGCGKTLLAKAIANEC--QANFISVKGPELLTMWFGESEANVREI 565
Score = 30.7 bits (66), Expect = 0.58
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEA 440
+ +LL G PG+GKT IA +A G F + G EI S ++E+
Sbjct: 242 KGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMSKLAGESES 287
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 31.9 bits (69), Expect = 0.25
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
+ +LL G PGTGKT +A +A +T F +++ S + S +E L + +
Sbjct: 146 KGILLFGPPGTGKTMLAKAVATEC--NTTFFNISASSVVSKWRGDSEKLIRVL 196
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 31.9 bits (69), Expect = 0.25
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
+ +LL G PGTGKT +A +A +T F +++ S + S +E L + +
Sbjct: 137 KGILLFGPPGTGKTMLAKAVATEC--NTTFFNISASSVVSKWRGDSEKLIRVL 187
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 31.9 bits (69), Expect = 0.25
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 410
+ V+L G+PGTGKT +A +A + F + GSE+
Sbjct: 223 KGVILYGEPGTGKTLLAKAVANS--TSATFLRVVGSEL 258
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 31.9 bits (69), Expect = 0.25
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
+ +LL G PGTGKT +A +A G + F +++ S I S + E +A+
Sbjct: 986 KGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITSKWFGEGEKYVKAV 1036
>At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1278
Score = 31.9 bits (69), Expect = 0.25
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 291 AGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEM 425
AG+ V L G+ G+GK+ + L + PD+ ++ G E+ L++
Sbjct: 1059 AGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKLQL 1103
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 31.5 bits (68), Expect = 0.33
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +3
Query: 273 IREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEAL 443
+R G + VLL G PGTGKT +A +A + D F + S I + ++ L
Sbjct: 166 LRVGIKPPKGVLLYGPPGTGKTLLARAIASNI--DANFLKVVSSAIIDKYIGESARL 220
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 31.5 bits (68), Expect = 0.33
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
+ VL+ G PGTGKT +A +A G T F +++ + + S ++E + + +
Sbjct: 273 KGVLMFGPPGTGKTLLAKAVATECG--TTFFNVSSATLASKWRGESERMVRCL 323
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 31.5 bits (68), Expect = 0.33
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +3
Query: 273 IREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEAL 443
+R G + VLL G PGTGKT +A +A + D F + S I + ++ L
Sbjct: 166 LRVGIKPPKGVLLYGPPGTGKTLLARAIASNI--DANFLKVVSSAIIDKYIGESARL 220
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 31.1 bits (67), Expect = 0.44
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTE 437
+ +LL G PGTGKT +A + + L P + G E+ S + +TE
Sbjct: 251 KGMLLFGPPGTGKTLMARQIGKMLNGKDP-KIVNGPEVLSKFVGETE 296
>At1g73170.1 68414.m08466 expressed protein
Length = 666
Score = 31.1 bits (67), Expect = 0.44
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 240 GKEGRGVILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPD 377
G+ RG ++R+ G ++LL G PG GKT + +A+ LG D
Sbjct: 180 GRSVRGSA-NLLRDLVQDGNSLLLIGPPGVGKTTMIREVARMLGND 224
>At1g02530.1 68414.m00204 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1273
Score = 31.1 bits (67), Expect = 0.44
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 291 AGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEM 425
AG+ V L G+ G+GK+ + L + PD+ ++ G E+ L++
Sbjct: 1054 AGKTVALVGESGSGKSTVISLLQRFYDPDSGQITLDGVELKKLQL 1098
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 30.7 bits (66), Expect = 0.58
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
R +L G PGTGKT A LA+ G D + M G ++ L
Sbjct: 399 RNILFYGPPGTGKTMAARELARRSGLD--YALMTGGDVAPL 437
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 30.7 bits (66), Expect = 0.58
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 276 REGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPD 377
+ G+ R LL G PGTGK+++ +A LG D
Sbjct: 232 KTGRAWKRGYLLYGPPGTGKSSLIAAMANYLGYD 265
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 30.7 bits (66), Expect = 0.58
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
RAVL G PGTGKT+ A +A G P + + S ++E L A+
Sbjct: 362 RAVLFEGPPGTGKTSCARVIANQAG--IPLLYVPLEAVMSKYYGESERLLGAV 412
>At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein,
putative similar to multidrug resistant P-glycoprotein
GI:4204793 from [Solanum tuberosum]
Length = 1230
Score = 30.7 bits (66), Expect = 0.58
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 291 AGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEM 425
AG+ V L G+ G+GK+ + L + PD+ ++ G E+ L +
Sbjct: 1012 AGQTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKLRL 1056
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 30.7 bits (66), Expect = 0.58
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +3
Query: 294 GRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
G+ +LL G PGTGKT I G A A F ++ S + S + + E L +A+
Sbjct: 43 GKGLLLFGPPGTGKTMI--GKAIAGEAKATFFYISASSLTSKWIGEGEKLVRAL 94
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 30.7 bits (66), Expect = 0.58
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 285 KIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEM----SKTEALTQA 452
KI G +LL G PG GKT +A +A G + F S++ S+ + + S+ AL Q
Sbjct: 441 KIPG-GILLCGPPGVGKTLLAKAVAGEAGVN--FFSISASQFVEIYVGVGASRVRALYQE 497
Query: 453 IRKS 464
R++
Sbjct: 498 AREN 501
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 30.3 bits (65), Expect = 0.76
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSE 407
R VLL G PGTGKT +A +A F + GSE
Sbjct: 190 RGVLLYGPPGTGKTMLAKAVAN--HTTAAFIRVVGSE 224
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 30.3 bits (65), Expect = 0.76
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 276 REGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPD 377
+ G+ R LL G PGTGK+++ +A LG D
Sbjct: 231 KTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYD 264
>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
domain-containing protein contains Pfam profiles:
PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
family associated with various cellular activities (AAA)
Length = 956
Score = 30.3 bits (65), Expect = 0.76
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALG 371
+AVLL+G PG GKT A ++Q LG
Sbjct: 394 KAVLLSGTPGIGKTTSAKLVSQMLG 418
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 30.3 bits (65), Expect = 0.76
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 276 REGKIAGRAVLLAGQPGTGKTAIAMGLAQAL 368
R GK R LL G PGTGKT++ +A L
Sbjct: 239 RVGKPWKRGYLLYGPPGTGKTSLVAAIANYL 269
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 30.3 bits (65), Expect = 0.76
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
R ++ G PGTGKT +A +A+ G D + M G ++ L
Sbjct: 371 RNMMFYGPPGTGKTMVAREIARKSGLD--YAMMTGGDVAPL 409
>At3g45450.1 68416.m04908 Clp amino terminal domain-containing
protein contains Pfam profile: PF02861 Clp amino
terminal domain
Length = 341
Score = 30.3 bits (65), Expect = 0.76
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 261 ILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGP-DTPFT 389
++Q++ A L+ G+PG GK AIA G+AQ + D P T
Sbjct: 166 VVQILARRTCRNNACLI-GKPGVGKRAIAEGIAQRIASGDVPET 208
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 30.3 bits (65), Expect = 0.76
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
R ++ G PGTGKT +A +A+ G D + M G ++ L
Sbjct: 386 RNMMFYGPPGTGKTMVAREIARKSGLD--YAMMTGGDVAPL 424
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 30.3 bits (65), Expect = 0.76
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 267 QMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 410
+ +R G + VL G PG+GKT +A +A G F + GSE+
Sbjct: 230 KFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTG--ACFIRVVGSEL 275
>At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial
(LON) identical to Lon protease homolog 1 mitochondrial
precursor SP:O64948 from [Arabidopsis thaliana]
Length = 888
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 294 GRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 401
G + G PG GKT++A +A ALG S+ G
Sbjct: 401 GPVLCFVGPPGVGKTSLASSIAAALGRKFVRLSLGG 436
>At4g25960.1 68417.m03735 multidrug resistance P-glycoprotein,
putative similar to multidrug resistant P-glycoprotein
GI:4204793 from [Solanum tuberosum]
Length = 1233
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = +3
Query: 291 AGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAIRKSIG 470
AG+++ L GQ G+GK+++ + + P + G +I L++ +A+RK IG
Sbjct: 1017 AGKSMALVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKLDL-------KALRKHIG 1069
Query: 471 I 473
+
Sbjct: 1070 L 1070
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 276 REGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPD 377
R GK R LL G PGTGK+++ +A L D
Sbjct: 241 RVGKAWKRGYLLYGPPGTGKSSLIAAIANHLNFD 274
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 276 REGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPD 377
R GK R LL G PGTGK+++ +A L D
Sbjct: 293 RVGKAWKRGYLLYGPPGTGKSSLIAAMANHLNFD 326
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFS 416
+L G PG GKT +A +A G PF ++ +E+ S
Sbjct: 270 ILFHGPPGCGKTKLANAIANEAG--VPFYKISATEVIS 305
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 306 LLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTE 437
LL G PG GKT IA A G + F + G+E+ + + ++E
Sbjct: 566 LLYGPPGCGKTLIAKAAANEAGAN--FMHIKGAELLNKYVGESE 607
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEI 410
+ VL G PGTGKT +A +A D F + GSE+
Sbjct: 203 KGVLCYGPPGTGKTLLARAVANR--TDACFIRVIGSEL 238
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 276 REGKIAGRAVLLAGQPGTGKTAIAMGLAQAL 368
R GK R LL G PGTGK+++ +A L
Sbjct: 247 RVGKAWKRGYLLYGPPGTGKSSLVAAMANYL 277
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 276 REGKIAGRAVLLAGQPGTGKTAIAMGLAQAL 368
R GK R LL G PGTGK+++ +A L
Sbjct: 247 RVGKAWKRGYLLYGPPGTGKSSLVAAMANYL 277
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 276 REGKIAGRAVLLAGQPGTGKTAIAMGLAQAL 368
R GK R LL G PGTGK+++ +A L
Sbjct: 239 RVGKAWKRGYLLYGPPGTGKSSLVAAMANYL 269
>At5g04970.1 68418.m00526 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 624
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 331 PVPG*PANNTARPAILPSRIICKMTPRPSL 242
P P P+ + ++P+ LP I CK TP P L
Sbjct: 68 PTPP-PSQSPSQPSPLPPNIACKSTPYPKL 96
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
+ VLL G PGTGKT +A A A + F +AG ++ +
Sbjct: 206 KGVLLYGPPGTGKTLMAR--ACAAQTNATFLKLAGPQLVQM 244
>At2g26910.1 68415.m03228 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 240 GKEGRGVILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALG 371
GK + IL I R LL G P +GKT + + LA LG
Sbjct: 143 GKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 261 ILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALG 371
+L+ I VLL G+ GTGKT + LA +G
Sbjct: 656 LLEKIARSVEYNEPVLLVGETGTGKTTLVQNLAHWIG 692
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +3
Query: 261 ILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALG 371
+L+++R +++ + +LL G PG GKT++ + L + G
Sbjct: 1735 VLRVLRAMQLS-KPILLEGSPGVGKTSLILALGKYSG 1770
>At1g33290.2 68414.m04118 sporulation protein-related isoform
contains non-consensus AT-donor acceptor site at intron
6; similar to Stage III sporulation protein AA.
(Swiss-Prot:Q01367) [Bacillus subtilis]; similar to
SpoIIIAA (GI:1303904) [Bacillus subtilis]; similar to
stage III sporulation protein AA (GI:18145497)
[Clostridium perfringens str. 13]
Length = 303
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 294 GRAVLLAGQPGTGKTAIAMGLAQALGPD 377
G+++L G+PG GKT + +A+ L +
Sbjct: 164 GKSILFVGRPGVGKTTVLREIARVLSDE 191
>At1g33290.1 68414.m04117 sporulation protein-related isoform
contains non-consensus AT-donor acceptor site at intron
6; similar to Stage III sporulation protein AA.
(Swiss-Prot:Q01367) [Bacillus subtilis]; similar to
SpoIIIAA (GI:1303904) [Bacillus subtilis]; similar to
stage III sporulation protein AA (GI:18145497)
[Clostridium perfringens str. 13]
Length = 379
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 294 GRAVLLAGQPGTGKTAIAMGLAQALGPD 377
G+++L G+PG GKT + +A+ L +
Sbjct: 164 GKSILFVGRPGVGKTTVLREIARVLSDE 191
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSL 419
+ VLL G PGTGKT +A A A + F +AG ++ +
Sbjct: 205 KGVLLYGPPGTGKTLMAR--ACAAQTNATFLKLAGPQLVQM 243
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAI 455
R +LL G PG GKT +A +A F +++ S + S + + E L + +
Sbjct: 250 RGLLLFGPPGNGKTMLAKAVASE--SQATFFNVSASSLTSKWVGEAEKLVKTL 300
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 276 REGKIAGRAVLLAGQPGTGKTAIAMGLAQAL 368
R GK R LL G PGTGK+++ +A L
Sbjct: 237 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 267
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 276 REGKIAGRAVLLAGQPGTGKTAIAMGLAQAL 368
R GK R LL G PGTGK+++ +A L
Sbjct: 238 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 268
>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
protein GI:497629, SP:P42762 from [Arabidopsis
thaliana]; contains Pfam profile PF02861: Clp amino
terminal domain
Length = 945
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 306 LLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEM 425
+L G+ G GKTAIA GLA ++ + + I SL++
Sbjct: 313 ILLGEAGVGKTAIAEGLAISIAEASAPGFLLTKRIMSLDI 352
>At5g46540.1 68418.m05730 ABC transporter family protein contains Pfam
profile: PF00005 ABC transporter; similar to
multidrug-resistant protein CjMDR1 GI:14715462 from
[Coptis japonica]
Length = 1248
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 291 AGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMS 428
+G+ V L G+ G+GK+ + L + PD+ + EI SL++S
Sbjct: 1032 SGQTVALVGESGSGKSTVISLLERFYDPDSGKILLDQVEIQSLKLS 1077
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAIRKSIGIR 476
R++ + G PG GKT +A + + D + + E F E E L + +++ IG
Sbjct: 190 RSIGIWGMPGIGKTTLAKAVFNHMSTD--YDASCFIENFD-EAFHKEGLHRLLKERIGKI 246
Query: 477 IKEESEI 497
+K+E +I
Sbjct: 247 LKDEFDI 253
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQAL 368
R +LL G PGTGKT + L +L
Sbjct: 754 RGILLHGHPGTGKTLVVRALIGSL 777
>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
(Replication factor C 40 kDa subunit, A1 40 kDa subunit,
RF-C 40 kDa subunit, RFC40) [Mus musculus]
Length = 333
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 240 GKEGRGVILQMI-REGKIAGRAVLLAGQPGTGKTAIAMGLAQAL 368
G E LQ+I R+G + ++L+G PGTGKT + LA L
Sbjct: 31 GNEDAVSRLQVIARDGNMPN--LILSGPPGTGKTTSILALAHEL 72
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLA-QALGPD 377
+L G PGTGKT A+ +A Q GP+
Sbjct: 33 MLFYGPPGTGKTTTALAIAHQLFGPE 58
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLA-QALGPD 377
+L G PGTGKT A+ +A Q GP+
Sbjct: 45 MLFYGPPGTGKTTTALAIAHQLFGPE 70
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 276 REGKIAGRAVLLAGQPGTGKTAIAMGLAQAL 368
R GK R+ L G PGTGK+++ +A L
Sbjct: 214 RVGKAWKRSYFLYGPPGTGKSSLVAAMANYL 244
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 276 REGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPD 377
R G+ R LL G PGTGK+++ +A L D
Sbjct: 231 RTGRAWKRGYLLYGPPGTGKSSMIAAMANYLRYD 264
>At4g01820.1 68417.m00239 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1229
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 291 AGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEM 425
AG+ V L G+ G+GK+ + L + PD+ ++ E+ L++
Sbjct: 1011 AGQTVALVGESGSGKSTVISLLQRFYDPDSGHITLDRVELKKLQL 1055
>At3g10420.2 68416.m01250 sporulation protein-related similar to
hypothetical proteins: GB:P51281 [Chloroplast Porphyra
purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
[Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
caldarium]; similar to stage III sporulation protein AA
(GI:18145497) [Clostridium perfringens str. 13]; similar
to stage III sporulation protein AA (mutants block
sporulation after engulfment) (GI:22777578)
[Oceanobacillus iheyensis]
Length = 684
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 267 QMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPD 377
++IR+ G ++L+ G PG GKT + +A+ L +
Sbjct: 204 EIIRDLIEGGGSILVIGSPGVGKTTLIREIARMLADE 240
>At3g10420.1 68416.m01249 sporulation protein-related similar to
hypothetical proteins: GB:P51281 [Chloroplast Porphyra
purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
[Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
caldarium]; similar to stage III sporulation protein AA
(GI:18145497) [Clostridium perfringens str. 13]; similar
to stage III sporulation protein AA (mutants block
sporulation after engulfment) (GI:22777578)
[Oceanobacillus iheyensis]
Length = 547
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 267 QMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPD 377
++IR+ G ++L+ G PG GKT + +A+ L +
Sbjct: 204 EIIRDLIEGGGSILVIGSPGVGKTTLIREIARMLADE 240
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1426
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 294 GRAVLLAGQPGTGKTAIAMGLAQAL 368
GR LL G PG+GK+ + + LA L
Sbjct: 186 GRMTLLLGPPGSGKSTLLLALAGKL 210
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 282 GKIAGRAVLLAGQPGTGKTAIAMGLAQALGPD 377
GK R LL G PGTGK+ + +A L D
Sbjct: 239 GKAWKRGYLLFGPPGTGKSTMIAAMANLLEYD 270
>At4g39540.2 68417.m05591 shikimate kinase family protein similar to
shikimate kinase precursor from Lycopersicon esculentum
[SP|Q00497]; contains Pfam shikimate kinase domain
PF01202
Length = 300
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 294 GRAVLLAGQPGTGKTAIAMGLAQALG 371
GR++ L G G+GKT + +A++LG
Sbjct: 98 GRSMYLVGMMGSGKTTVGKIMARSLG 123
>At4g39540.1 68417.m05590 shikimate kinase family protein similar to
shikimate kinase precursor from Lycopersicon esculentum
[SP|Q00497]; contains Pfam shikimate kinase domain
PF01202
Length = 300
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 294 GRAVLLAGQPGTGKTAIAMGLAQALG 371
GR++ L G G+GKT + +A++LG
Sbjct: 98 GRSMYLVGMMGSGKTTVGKIMARSLG 123
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.9 bits (59), Expect = 4.1
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 367 RACANPIAMAVFPVPG*PANNTARPAILPSRIICKMTPRPSLPSSG--RPCPAILVLAPK 194
R+ P+ + P P + P+I PS I +P P+ PS G P P+I+ P
Sbjct: 402 RSTRPPVVVPSPPTTPSPGGSPPSPSISPSPPITVPSP-PTTPSPGGSPPSPSIVPSPPS 460
Query: 193 SHLSP 179
+ SP
Sbjct: 461 TTPSP 465
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGP 374
R LL G PG GKT + + L+ L P
Sbjct: 163 RMTLLLGPPGCGKTTLLLALSGRLDP 188
>At4g14700.1 68417.m02259 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1) [Homo sapiens]
SWISS-PROT:Q13415
Length = 809
Score = 27.9 bits (59), Expect = 4.1
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +3
Query: 228 RPEDGKEGRGVILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG-- 401
R ++ +E I I + + GR + + G PGTGKT + + + L + S++
Sbjct: 437 RSKEMEEITAFIKGSISDDQCLGRCMYIHGVPGTGKTISVLSVMKNLKAEVEAGSVSPYC 496
Query: 402 -SEIFSLEMSKTEALTQAIRKSI 467
EI L+++ E + I + +
Sbjct: 497 FVEINGLKLASPENIYSVIYEGL 519
>At4g12620.1 68417.m01988 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1)[Homo sapiens]
SWISS-PROT:Q13415
Length = 813
Score = 27.9 bits (59), Expect = 4.1
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +3
Query: 228 RPEDGKEGRGVILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG-- 401
R ++ +E I I + + GR + + G PGTGKT + + + L + S++
Sbjct: 442 RSKEMEEITSFIKGSISDDQCLGRCMYIHGVPGTGKTISVLSVMKNLKAEVEEGSVSPYC 501
Query: 402 -SEIFSLEMSKTEALTQAIRKSI 467
EI L+++ E + I +++
Sbjct: 502 FVEINGLKLASPENIYSVIYEAL 524
>At5g66005.2 68418.m08311 Expressed protein
Length = 164
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 294 GRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAG 401
G+ +L+ G PG GKT + M + + P + G
Sbjct: 5 GKCLLVTGPPGVGKTTLIMRVLDMMRVSNPNLKIQG 40
>At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing
protein contains similarity to (R)-specific enoyl-CoA
hydratase PhaJ1 [Pseudomonas oleovorans]
gi|22506675|gb|AAM97601; contains Pfam domain PF01575:
MaoC like domain
Length = 337
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQA 365
+L+ G PGTGK+ A LA+A
Sbjct: 16 LLITGTPGTGKSTTASALAEA 36
>At5g50340.1 68418.m06235 DNA repair protein-related similar to RadA
[Pseudomonas aeruginosa] GI:1881700
Length = 491
Score = 27.5 bits (58), Expect = 5.4
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = +3
Query: 261 ILQMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEA 440
+ +++ G G +L+ G PG GK+ + + +A + + A S E S +
Sbjct: 105 VARVLGGGLAPGSLILIGGDPGIGKSTLLLQIASIIAEGSELAEPAPVLYISGEESVEQI 164
Query: 441 LTQAIRKSI 467
++A R I
Sbjct: 165 GSRADRMRI 173
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 282 GKIAGRAVLLAGQPGTGKTAIAMGLAQAL 368
GK R LL G PGTGK+ + +A L
Sbjct: 237 GKAWKRGYLLYGPPGTGKSTMISAMANLL 265
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 282 GKIAGRAVLLAGQPGTGKTAIAMGLAQAL 368
GK R LL G PGTGK+ + +A L
Sbjct: 232 GKAWKRGYLLYGPPGTGKSTMIAAMANLL 260
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 282 GKIAGRAVLLAGQPGTGKTAIAMGLAQALGPD 377
GK R LL G PGTGK+ + +A L D
Sbjct: 236 GKAWKRGYLLFGPPGTGKSTMIAAMANFLEYD 267
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 276 REGKIAGRAVLLAGQPGTGKTAIAMGLAQAL 368
R GK R LL G PGTGK+ + +A +
Sbjct: 230 RIGKAWKRGYLLYGPPGTGKSTMIAAMANLM 260
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQAL-GP 374
+LL G PGTGKT+ + +A+ L GP
Sbjct: 75 LLLYGPPGTGKTSTILAVARKLYGP 99
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 294 GRAVLLAGQPGTGKTAIAMGLAQAL 368
GR LL G P +GKT + + LA L
Sbjct: 197 GRMTLLLGPPSSGKTTLLLALAGKL 221
>At1g15520.1 68414.m01867 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1423
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 294 GRAVLLAGQPGTGKTAIAMGLAQAL 368
GR LL G P +GKT + + LA L
Sbjct: 180 GRMALLLGPPSSGKTTLLLALAGKL 204
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 27.1 bits (57), Expect = 7.1
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQALGPDTPFTSMAGSEIFSLEMSKTEALTQAIR 458
VLL G PG GKT I A A F S+ G E+ + + +E QA+R
Sbjct: 881 VLLYGPPGCGKTHIVGAAAAAC--SLRFISVKGPELLNKYIGASE---QAVR 927
>At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1607
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 297 RAVLLAGQPGTGKTAIAMGLAQALGP 374
R + + G PG+GKT IA L Q L P
Sbjct: 290 RLIGICGLPGSGKTTIAKRLYQQLLP 315
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 303 VLLAGQPGTGKTAIAMGLAQALGPDTP 383
VL+ G PGTGKT + + A+ TP
Sbjct: 276 VLIQGPPGTGKTQTILSILGAIMHATP 302
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 294 GRAVLLAGQPGTGKTAIAMGLAQAL 368
GR LL G PG GKT + L+ L
Sbjct: 164 GRMTLLLGPPGCGKTTLLQALSGRL 188
>At3g54640.1 68416.m06045 tryptophan synthase, alpha subunit (TSA1)
identical to gi:619753
Length = 312
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 267 QMIREGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPD 377
Q+ ++GK+A + AG P TA A+ + A G D
Sbjct: 57 QLKKQGKVAFIPYITAGDPDLSTTAEALKVLDACGSD 93
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = -1
Query: 376 SGPRACANPIAMAVFPVPG*PANNTARPAILPSRIICKMTPRPSLPSSGR 227
SG +P P P P +T P+ TP PS P++G+
Sbjct: 271 SGASPSGSPTPTPSTPTPSTPTPSTPTPSTPTPSTPTPSTPAPSTPAAGK 320
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 282 GKIAGRAVLLAGQPGTGKTAIAMGLAQAL 368
GK R LL G PGTGK+ + +A L
Sbjct: 232 GKAWKRGYLLHGPPGTGKSTMIAAMANHL 260
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 282 GKIAGRAVLLAGQPGTGKTAIAMGLAQALGPD 377
GK R LL G PGTGK+ + +A L D
Sbjct: 239 GKPWKRGYLLFGPPGTGKSTMIAAIANFLDYD 270
>At4g19210.1 68417.m02834 RNase L inhibitor protein, putative
similar to 68 kDa protein HP68 GI:16755057 from
[Triticum aestivum]
Length = 605
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 273 IREGKIA-GRAVLLAGQPGTGKTAIAMGLAQALGPD 377
+ EG+ + +++ G+ GTGKT LA L PD
Sbjct: 366 VSEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPD 401
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 294 GRAVLLAGQPGTGKTAIAMGLA 359
GR LL G PG GKT + L+
Sbjct: 167 GRMTLLLGPPGCGKTTLLQALS 188
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 26.6 bits (56), Expect = 9.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 276 REGKIAGRAVLLAGQPGTGKTAIAMGLAQALGPD 377
R G+ R LL G PG GKT++ +A+ L D
Sbjct: 193 RVGRHWMRYYLLHGLPGAGKTSLVAAIAKYLNFD 226
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 26.6 bits (56), Expect = 9.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 282 GKIAGRAVLLAGQPGTGKTAIAMGLAQALGPD 377
GK R LL G PGTGK+ + +A L D
Sbjct: 235 GKPWKRGYLLFGPPGTGKSTMISAMANFLEYD 266
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,371,470
Number of Sequences: 28952
Number of extensions: 217543
Number of successful extensions: 790
Number of sequences better than 10.0: 136
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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