Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021863
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.9  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   3.8  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   3.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   3.8  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   3.8  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   3.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 51   ELPAAPFDLQVLDEVG--LDSGNISGCPTNSDYVRYVM 158
            E+P  P+ L+VLD+ G  +    ++    NS   RY++
Sbjct: 894  EVPEVPYGLKVLDKSGRSVQLSWVAPFDGNSPITRYMI 931


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
 Frame = +2

Query: 347 NVPRCRSPRCGRCWRSSSPTCR--PSPARSSLKISRSKQRP 463
           NVP C     GR            P+P     K+SR K RP
Sbjct: 227 NVPECADWYKGRLTDEQLKELENPPTPKPRPTKVSRRKPRP 267


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -3

Query: 304 PQDLFQHHRSVP 269
           PQ+++ HH+++P
Sbjct: 60  PQEVYYHHQTIP 71


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 205 VGSRTCPRPRSFASRSCAL 261
           +GS +C  P+ F  ++C L
Sbjct: 203 IGSYSCKCPKGFQGQNCEL 221


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -3

Query: 304 PQDLFQHHRSVP 269
           PQ+++ HH+++P
Sbjct: 60  PQEVYYHHQTIP 71


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -3

Query: 304 PQDLFQHHRSVP 269
           PQ+++ HH+++P
Sbjct: 60  PQEVYYHHQTIP 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,939
Number of Sequences: 336
Number of extensions: 3116
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)