Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021863
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    27   2.3  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    27   3.1  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    27   3.1  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    27   3.1  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    26   5.4  
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.4  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    25   9.4  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   9.4  

>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 371 RCGRCWRSSSPTCRPSPARSS 433
           +C R W   SP+C PSP  ++
Sbjct: 318 QCHRLWLVQSPSCPPSPKNNA 338


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 183 EYCESEFGRQPYLPAAEELCIAQLRPPPNGTE 278
           EYCE+EF R+     AE L +     P NG E
Sbjct: 853 EYCEAEFKRRK--ADAERLAVQNSNNPINGQE 882


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -3

Query: 340 VHEQHPRGAAAGP---QDLFQHHRSVPFGGGRSCAMQSSSAAGRYGCRPN 200
           V   H +G    P   Q      ++VP  G  SCA++S ++   +G RP+
Sbjct: 91  VEAPHSKGLGVFPGLVQRFDNDDKTVPHIGWNSCAVRSDTSKEFFGMRPH 140


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 519 HLPVRGCDKQDVGIYTIRVPELIEAMS 599
           HLP    + Q +G  T   PEL++AMS
Sbjct: 479 HLPNLQDETQHIGTATYAAPELLDAMS 505


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -1

Query: 522 DGRRDLVRAAHEPTRLRKHLGRCLL--REIFNDDLAGDGRQVGDE 394
           DGRRD +    E  R  + +GR  L  RE F  +       VGDE
Sbjct: 220 DGRRDRILKQAEERRSNRAVGRSNLSGREYFESNKDKTHEVVGDE 264


>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 415 VACQIVIEDFPKQATAEMLAKARRFMSGPDKVAPP 519
           ++C +V+   P +  A+ML      +  P+K  PP
Sbjct: 157 ISCSLVLNFAPPELRAKMLLHCTGLLMPPNKEQPP 191


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 296 SVPAPPLCAIRRRAQLRDAKLLGRGQVRLPTEFALAVFPHPRGEL 162
           S P P +    R+AQ  +      G V L +EF    +P+PRG+L
Sbjct: 13  SQPPPRVAEFIRQAQNEEVTS-DLGLVSLCSEFRKNDWPYPRGDL 56


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 513 RDLVRAAHEPTRLRKHLGRCLLREIFNDDLAGDGRQVGDELRQHLPQR 370
           +D  +  H P  L +  G+C+L++  N   A   +   DE+   LPQ+
Sbjct: 164 QDFQKKVHGPPALSEKPGKCILKDKTN---AHVNKIPQDEVNYSLPQK 208


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 386 WRSSSPTCRPSPARSSLKISRSKQRPRCL 472
           W SSSP+  PS + S  ++   +Q  R L
Sbjct: 30  WNSSSPSSAPSSSSSQNQVELDEQFARSL 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,340
Number of Sequences: 5004
Number of extensions: 47198
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)