Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021863
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42616| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_49729| Best HMM Match : Vps54 (HMM E-Value=3.7)                     31   1.1  
SB_20347| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-20)         30   1.4  
SB_51217| Best HMM Match : TUDOR (HMM E-Value=0)                       30   1.9  
SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)                       29   3.3  
SB_33101| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_50235| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_36954| Best HMM Match : PH (HMM E-Value=1.2e-22)                    27   9.9  

>SB_42616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 512

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 56  AGRALRPASAGRG-RPGLWEHIGLPHELGLRAIRHDEAPRADEGILRERIRSAA 214
           A R   P   G G R   W+ +    +  LR ++H E+P A E   RE +R+ A
Sbjct: 256 ATRPKHPVRVGAGMRLAKWDRLNRAKKETLRVVQHVESPVASESQGREGLRTRA 309


>SB_49729| Best HMM Match : Vps54 (HMM E-Value=3.7)
          Length = 353

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
 Frame = +2

Query: 8   RNRTSDVRHRPGLHRAAGR---ALRPASAGRGRPGL----WEHIGLPHELGLRAIRHDEA 166
           RNRT+ +     LHR       A RP   GR   G     W  I    +  LR ++H E+
Sbjct: 172 RNRTNKLLMN--LHRVTSPEPPATRPKHPGRVEAGRRLAKWNRINSAKKEALRVVQHVES 229

Query: 167 PRADEGILRERIRSAAV 217
           P A E   RE +R+  +
Sbjct: 230 PVASEPQGREGLRAEGI 246


>SB_20347| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-20)
          Length = 1074

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +3

Query: 354  RGAGLRAAEDAGGVR-HRPAGRRLPDRH*RFPEASNGRDACEGASVHERPGQGRAAHL 524
            RGA +R  +     R  RP  R  P    R  +++  R AC   SVH R    RAA L
Sbjct: 1003 RGAQVRLVKKGKPSRLDRPVQRLYPIEEVRCADSTVNRSACADRSVHTRARSTRAAAL 1060


>SB_51217| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 652

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 269 WHRAVVLEQILGPGGGTARVLFVDHGNVPRCRSPR 373
           W+RA + E I      T +VL+VD+GN     S R
Sbjct: 121 WYRAQIQECIFNRDTTTVKVLYVDYGNTEYLPSTR 155


>SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -1

Query: 342 WSTNSTRAVPPPGPRICSSTTAL--CHSEE 259
           WS N TRA  P G +I + +TA+  C+S++
Sbjct: 35  WSLNPTRAFDPNGAKIWAKSTAITFCYSKD 64


>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 2538

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 269  WHRAVVLEQILGPGGGTARVLFVDHGNVPRCRSPR 373
            W+RA VLE     G GTA V +VD+GN     + R
Sbjct: 2107 WYRAEVLEV----GEGTATVRYVDYGNTESLSTTR 2137


>SB_33101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
 Frame = +3

Query: 357 GAGLRAAEDAGGVRHRPA-GRRLPDRH--*RFPEASNGRDACEGASVHERPGQGRAAHL 524
           GAG R   DAG  RH    G   P+ H    F       DAC     H R G      L
Sbjct: 168 GAGKRTCSDAGRHRHSMGNGNEPPECHIFSEFGTLHVAADACRNGKCHVRTGYAHETSL 226


>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 396 RHRPA-GRRLPDRH*RFPEASNGRDA 470
           R RPA GRRLP R    P+A+NG  A
Sbjct: 129 RARPARGRRLPTRPSNRPQATNGEQA 154


>SB_50235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 880

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +2

Query: 65  ALRPASAGRGRPGL----WEHIGLPHELGLRAIRHDEAPRADEGILRERIRSAA 214
           A RP   GR   G     W  I    +  LR ++H E+P A E    E +R+ A
Sbjct: 504 ATRPKHPGRVEAGRRLAKWNRIKRAKKKALRVVQHVESPVASESQRLESLRARA 557


>SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 729

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 306 PAAAPRGCCSWTTATCRGAGLRAAEDAGGVRHRP 407
           PAA P     W     +  G   A++AGG + RP
Sbjct: 367 PAAKPEAKPQWAQTKLKKGGGGGADEAGGKKERP 400


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 265 GGGRSCAMQSSSAAGRYGCRPNSL 194
           G G++C       AG+Y C PN+L
Sbjct: 35  GDGKTCTDIDECQAGKYSCDPNAL 58


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 353  PRCRSPRCGRCWRSSSPTCRPS-PARSSLKISRSKQRPR 466
            PR  S R  +  R      RPS PAR S ++SRS   PR
Sbjct: 1140 PRSASMRSNQADRLLEERVRPSRPARRSKQLSRSTSDPR 1178


>SB_36954| Best HMM Match : PH (HMM E-Value=1.2e-22)
          Length = 501

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 376 RKMLAEFVTDLPAVACQIVIEDFPKQATAEMLAKARRFMSGPDKVAPP 519
           ++ML++ V D P  A +I    + K A   + A   R +   D++ PP
Sbjct: 198 KQMLSDDVYDTPPSASEISQRVYQKDARCPIAAAPDRALEAYDQIPPP 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,260,118
Number of Sequences: 59808
Number of extensions: 460512
Number of successful extensions: 1570
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1570
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)