Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021863
         (648 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    32   0.018
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    27   0.39 
AY748840-1|AAV28188.1|  104|Anopheles gambiae cytochrome P450 pr...    26   0.89 
AY578797-1|AAT07302.1|  304|Anopheles gambiae activin protein.         26   1.2  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    25   1.6  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   4.8  
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    23   8.3  
AY334004-1|AAR01129.1|  194|Anopheles gambiae integrin protein.        23   8.3  
AY334003-1|AAR01128.1|  194|Anopheles gambiae integrin protein.        23   8.3  
AY334002-1|AAR01127.1|  194|Anopheles gambiae integrin protein.        23   8.3  
AY334001-1|AAR01126.1|  194|Anopheles gambiae integrin protein.        23   8.3  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    23   8.3  

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 31.9 bits (69), Expect = 0.018
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +2

Query: 353 PRCRSPRCGRCWRSSSPTCRPSPARSSLKISRSKQRPR 466
           PR RSPR G  W    P+CR  PAR   + +R    PR
Sbjct: 257 PRRRSPRSGGRW----PSCRSPPARRRSRSTRPTSWPR 290



 Score = 27.5 bits (58), Expect = 0.39
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +2

Query: 344 GNVPRCRSPRCGRCWRSSSPTCRPSPARSSLKISRSKQRPR 466
           G  P CRSP   R  RS+ PT  P  +R + K  R  +R R
Sbjct: 266 GRWPSCRSPPARRRSRSTRPTSWPR-SRPTSKPKRLPRRRR 305


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 27.5 bits (58), Expect = 0.39
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 56  AGRALRPASAGRGRPGLWEHIGLPHELGLRAIRHDEAPRADEGIL 190
           AG   RP ++G   PG   + G+P E G   +R +  P+ + G+L
Sbjct: 597 AGEPGRPGASGV--PGERGYPGMPGEDGTPGLRGEPGPKGEPGLL 639


>AY748840-1|AAV28188.1|  104|Anopheles gambiae cytochrome P450
           protein.
          Length = 104

 Score = 26.2 bits (55), Expect = 0.89
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 289 QHHRSVPFGGG-RSCAMQS 236
           +H RSVPFG G R CA +S
Sbjct: 86  EHDRSVPFGAGKRVCAGES 104


>AY578797-1|AAT07302.1|  304|Anopheles gambiae activin protein.
          Length = 304

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 18/58 (31%), Positives = 23/58 (39%)
 Frame = -3

Query: 340 VHEQHPRGAAAGPQDLFQHHRSVPFGGGRSCAMQSSSAAGRYGCRPNSLSQYSLIRAG 167
           V +Q+ R   AG + L + H     GGG      +  A     C P   S  SLI  G
Sbjct: 226 VIDQYRRQGGAGNRGLGKMHHKAGGGGGGGAGGGAGLAGIHQCCAPVKYSPMSLIFYG 283


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +2

Query: 38  PGLHRAAGRALRPASAG----RGRPGLWEHIGLPHELGLRAIRHDEAPRADEGI 187
           PG    AG    P   G    +G PGL   IG P  +GL   + D     ++G+
Sbjct: 163 PGPKGPAGHPGAPGRPGVDGVKGLPGLKGDIGAPGVIGLPGQKGDMGQAGNDGL 216



 Score = 23.0 bits (47), Expect = 8.3
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +2

Query: 38  PGLHRAAGRALRPASAGRGRPGLWEHIGLPHELG 139
           PGL    G   R     RG PGL   +G P E G
Sbjct: 112 PGLRGPKGE--RGGMGDRGDPGLPGSLGYPGEKG 143


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 196 ANSVGSRTCPRPRSFASRSCALLRMAQSGGAGTD 297
           + S  +   P P + AS S  ++  + SGG G++
Sbjct: 736 SKSASTHPSPHPATRASPSSPIVATSSSGGGGSN 769


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 118 DMFPESRPTSSSTCRSKGAAGSSM*SRAVPYIRR 17
           D  P    +SSS+    GAAG+   + ++  IRR
Sbjct: 444 DSAPRGSSSSSSSATKAGAAGAGGTAGSMQMIRR 477


>AY334004-1|AAR01129.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 186 YCESEFGRQPYLPAAEELCI 245
           +CE++ G QP L ++ E CI
Sbjct: 57  FCETKDGEQPALCSSYEDCI 76


>AY334003-1|AAR01128.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 186 YCESEFGRQPYLPAAEELCI 245
           +CE++ G QP L ++ E CI
Sbjct: 57  FCETKDGEQPALCSSYEDCI 76


>AY334002-1|AAR01127.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 186 YCESEFGRQPYLPAAEELCI 245
           +CE++ G QP L ++ E CI
Sbjct: 57  FCETKDGEQPALCSSYEDCI 76


>AY334001-1|AAR01126.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 186 YCESEFGRQPYLPAAEELCI 245
           +CE++ G QP L ++ E CI
Sbjct: 57  FCETKDGEQPALCSSYEDCI 76


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 186 YCESEFGRQPYLPAAEELCI 245
           +CE++ G QP L ++ E CI
Sbjct: 633 FCETKDGEQPALCSSYEDCI 652


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 666,053
Number of Sequences: 2352
Number of extensions: 14230
Number of successful extensions: 54
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)