Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021863
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55366-3|AAY86188.1|  118|Caenorhabditis elegans Hypothetical pr...    32   0.40 
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   5.0  
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ...    28   6.6  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    27   8.7  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    27   8.7  

>U55366-3|AAY86188.1|  118|Caenorhabditis elegans Hypothetical
           protein F41F3.8 protein.
          Length = 118

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 25  CTAPPWTTSSCRPRPSTCKC 84
           C  PP T +SC P PS+C C
Sbjct: 62  CECPPPTCNSCAPAPSSCGC 81


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 258 PPPNGTERWCWNRSWGPAAAPRGCCSWTTA 347
           P  NG    CW   +     P  C SW TA
Sbjct: 467 PDTNGIYTNCWETEYEQPLPPHTCVSWKTA 496


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 23/96 (23%), Positives = 37/96 (38%)
 Frame = -3

Query: 337 HEQHPRGAAAGPQDLFQHHRSVPFGGGRSCAMQSSSAAGRYGCRPNSLSQYSLIRAGSFV 158
           H  H  GA  G  ++  HH  V      S +  SSS++       +S S  S        
Sbjct: 81  HTHHAHGAHPGHHEVHHHHHHVKAQDSSSSSSSSSSSSSSSSSSSSSSSSSSSESEDEKH 140

Query: 157 MTYRT*SEFVGQPDMFPESRPTSSSTCRSKGAAGSS 50
              +   + + +     ES  +SSS+  S  ++ SS
Sbjct: 141 HHKKHAKKHLKKHHKKAESSSSSSSSSSSSSSSSSS 176


>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
           protein C07H6.3 protein.
          Length = 1378

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 24/92 (26%), Positives = 35/92 (38%)
 Frame = +1

Query: 187 TARANSVGSRTCPRPRSFASRSCALLRMAQSGGAGTDPXXXXXXXXXXXXXXXQRAEVPV 366
           T+  +S    T PRP + A++S +L     S  +   P                RA   +
Sbjct: 273 TSFTSSARLSTPPRPTTTAAQSLSLAPQTPSPLSLPSPSGGQMSRSRDLTRSSLRAPAGI 332

Query: 367 SALRKMLAEFVTDLPAVACQIVIEDFPKQATA 462
           S  R   +      PA  C I ++DF K  TA
Sbjct: 333 SISRYRSSSCA---PAAQCAITLDDFKKSFTA 361


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 507   GRAAHLPVRGCDKQDVGIYTIRVPE 581
             G+ A L ++  DK D+G YT  V E
Sbjct: 14691 GKRATLEIKNFDKHDIGAYTASVSE 14715


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 507   GRAAHLPVRGCDKQDVGIYTIRVPE 581
             G+ A L ++  DK D+G YT  V E
Sbjct: 14691 GKRATLEIKNFDKHDIGAYTASVSE 14715


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,222,089
Number of Sequences: 27780
Number of extensions: 310494
Number of successful extensions: 1042
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)