Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021863
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   4.4  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   4.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 51  ELPAAPFDLQVLDEVGLDSGNISGCP--TNSDYVRYVM 158
           E+P  P+ L+VLD+ G         P   NS   RYV+
Sbjct: 874 EVPEVPYGLKVLDKSGRSVQLSWAAPYDGNSPIKRYVI 911


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 234 ELCIAQLRPPPNGTERWCWNRSWGPAA 314
           +L +A L PP N  ++W  + +W P A
Sbjct: 88  QLVLAALYPP-NKLQQWNEDLNWQPIA 113


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 234 ELCIAQLRPPPNGTERWCWNRSWGPAA 314
           +L +A L PP N  ++W  + +W P A
Sbjct: 103 QLVLAALYPP-NKLQQWNEDLNWQPIA 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,831
Number of Sequences: 438
Number of extensions: 3919
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)