Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021863
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    30   1.2  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    30   1.2  
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ...    29   2.0  
At5g33210.1 68418.m03923 zinc finger protein-related similar to ...    29   2.7  
At3g12000.1 68416.m01486 S-locus related protein SLR1, putative ...    29   2.7  
At2g03560.1 68415.m00316 F-box family protein (FBX7) identical t...    28   6.1  
At5g05100.1 68418.m00541 expressed protein                             27   8.1  

>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/40 (47%), Positives = 21/40 (52%)
 Frame = +2

Query: 353 PRCRSPRCGRCWRSSSPTCRPSPARSSLKISRSKQRPRCL 472
           PR      GR  RSSS +  PSP R   KISRS+   R L
Sbjct: 344 PRKGRGPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPL 383


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/40 (47%), Positives = 21/40 (52%)
 Frame = +2

Query: 353 PRCRSPRCGRCWRSSSPTCRPSPARSSLKISRSKQRPRCL 472
           PR      GR  RSSS +  PSP R   KISRS+   R L
Sbjct: 351 PRKGRGPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPL 390


>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
           Membrane-associated protein Hem (Dhem-2)
           (Swiss-Prot:P55162) [Drosophila melanogaster]; weak
           similarity to Nck-associated protein 1 (NAP 1)
           (p125Nap1) (Membrane-associated protein HEM-2)
           (Swiss-Prot:P55161) [Rattus norvegicus]
          Length = 1339

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 267 NGTERWCWNRSWGPAAAPRGCCSW 338
           N    W  N  +GP   P+ CC+W
Sbjct: 597 NAAYNWSRNTMFGPEGRPQHCCAW 620


>At5g33210.1 68418.m03923 zinc finger protein-related similar to
           lateral root primordium 1 (LRP1) [Arabidopsis thaliana]
           GI:882341; contains Pfam profile PF05142: Domain of
           unknown function (DUF702),  TIGR01623: putative zinc
           finger domain, LRP1 type
          Length = 173

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
 Frame = +2

Query: 194 ERIRSAAVPXXXXXXXXXXXXPSSEWHRAVVLEQILGPGGGTARVLFVDHGNVPR--CRS 367
           E+I   +VP            P S   RA ++    G  GG+  V   D GN  +  C  
Sbjct: 6   EKIFEDSVPCRVRAKRGCATHPRSIAERAAMMMIRSGGSGGSGGVSCQDFGNQAKKDCSH 65

Query: 368 PRCGRCWRSSSPTCRPSPARSSLKISRSKQRPRCL 472
            RC  C +S    C      + +  ++ ++R + L
Sbjct: 66  MRCRTCCKSRGFECSTHVRSTWVPATKRRERQQQL 100


>At3g12000.1 68416.m01486 S-locus related protein SLR1, putative
           (S1) identical to S-locus related protein SLR1 homolog
           (AtS1) GI:246209 Arabidopsis thaliana]; contains Pfam
           profiles PF01453: Lectin (probable mannose binding),
           PF00954: S-locus glycoprotein family
          Length = 439

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 360 HLGTLPWSTNSTRAVPPP 307
           H GTL WSTN TR V  P
Sbjct: 116 HSGTLVWSTNLTRTVKSP 133


>At2g03560.1 68415.m00316 F-box family protein (FBX7) identical to
           F-box protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]; contains F-box domain PF:00646
          Length = 425

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 270 GTERWCWNRSW 302
           G + WCWNR W
Sbjct: 210 GDDSWCWNRKW 220


>At5g05100.1 68418.m00541 expressed protein
          Length = 324

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 333 NSTRAVPPPGPRICSSTTALCHS 265
           +STRA PPP PR+ S     C S
Sbjct: 174 SSTRAPPPPYPRLDSKHNTACPS 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,626,559
Number of Sequences: 28952
Number of extensions: 298027
Number of successful extensions: 1042
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)