Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021862
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    28   1.4  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    28   1.8  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   2.4  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   2.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    27   4.1  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   4.1  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   7.2  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    25   9.6  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.6  

>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 227 RSCVQSVSNTVENDEDRGIHKSSMNREKDRHDKHKSQ 337
           +S VQS  NT EN   +   K S NR+K+R ++ K++
Sbjct: 116 KSSVQSSLNTKENTPQQP--KKSRNRQKERLERRKAE 150


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 194 HGRHSHEGHCFRSCVQSVSNTVENDEDRGIHKSSMNREKDRHDKHKS 334
           HG+H H GH   S   S+ + V N  D+       + + D+H+KH S
Sbjct: 223 HGKHGHHGH---SGSLSLKSLVPNHHDK-------HDKHDKHEKHHS 259


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 166 ATNMSPKVGSSARSAGLVRLDPSTTACQRPSSSNTSTFCPSES 38
           AT ++PK+G    +   + +D    + Q   SS+T    PS+S
Sbjct: 126 ATLIAPKIGLDRPNINAITIDVDGHSLQNEISSSTDKLSPSQS 168


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = -2

Query: 172 LSATNMSPKVGSSARSAGLVRLDPSTTACQRPSSSNTSTFCPSESAT*SLSPTQSTA 2
           +S+T  S    S + S+      PS+++    SSS++S+   S S++ S S + S++
Sbjct: 132 VSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 188


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 182 NTSKHGRHSHEGHCFRSCVQSVSNTVENDEDRGIHKSSMNREKD 313
           N  +    + E    +S  +SVS T  ND+ +G++ S   R++D
Sbjct: 441 NCLQESSFATESSTEKSASESVSETAVNDDCKGMNFSGNRRQED 484


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 227  RSCVQSVSNTVENDEDRGIHKSSMNREKDRHDKHKSQTIP 346
            R+ + ++     ND+   I  +    +KD HDK  S+ +P
Sbjct: 1126 RNSLLALFGLTNNDDPNNILTTKQRTQKDLHDKLTSKKVP 1165


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 76  SSSNTSTFCPSESAT*SLSPTQST 5
           SSS TS+  P+ + T S++PT +T
Sbjct: 843 SSSTTSSITPTPTTTSSITPTPTT 866


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 681 IYPSFYLCFRCLFLE*NPV*PSDGRHFP 598
           +Y SF      L LE  PV   +GRHFP
Sbjct: 377 LYCSFVYAIIYLLLEAYPVIFQEGRHFP 404


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 17/56 (30%), Positives = 32/56 (57%)
 Frame = -2

Query: 169 SATNMSPKVGSSARSAGLVRLDPSTTACQRPSSSNTSTFCPSESAT*SLSPTQSTA 2
           S+++ S  V S+  S+      PSTT+    SSS++S+     S++ S S ++S++
Sbjct: 121 SSSSSSSLVSSTTSSSSSAT--PSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSS 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,075
Number of Sequences: 5004
Number of extensions: 53442
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)