Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021862
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0349 + 15032131-15033117                                         29   4.4  
05_05_0175 + 22966151-22967614                                         29   4.4  
12_01_0901 - 8736190-8736240,8736426-8736821                           28   7.6  
09_01_0013 - 355103-355435                                             28   7.6  
03_05_0538 + 25368590-25368868                                         28   7.6  

>06_02_0349 + 15032131-15033117
          Length = 328

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 151 PKVGSSARSAGLVRLDPSTTACQRP-SSSNTSTFCPSESAT*SLSP 17
           P VG+      LV  DPS   C+RP +S   + F    S   SLSP
Sbjct: 74  PVVGADYADPHLVVTDPSMWTCERPFTSVRAAPFSLDTSTRFSLSP 119


>05_05_0175 + 22966151-22967614
          Length = 487

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = +1

Query: 37  PTRSDRRSTCSSWTAAGTP----WCSGPTSPARP 126
           P  + RRS C S +AAGTP     C G  SP  P
Sbjct: 71  PLPTPRRSCCGSSSAAGTPRSAARCGGGGSPGAP 104


>12_01_0901 - 8736190-8736240,8736426-8736821
          Length = 148

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = +2

Query: 392 ANLFKMPLVQPDITIELNPPKSEGIRHHEPPRDALNQARCLLQPGL*DLRHQYLHVCLSP 571
           ++L   PL   D+ + L+PP     +   PPR AL  +R   QP    LR   L V LSP
Sbjct: 34  SSLHYQPLHLDDLQVPLSPPPPSTRQQQPPPRPAL--SRLHYQP----LRLADLQVPLSP 87


>09_01_0013 - 355103-355435
          Length = 110

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 570 GDRHTWRYWWRRSYRPGWSRQR 505
           G R  WR  WR   RP W  QR
Sbjct: 34  GGRRAWRPRWRPQRRPRWRPQR 55


>03_05_0538 + 25368590-25368868
          Length = 92

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +2

Query: 173 QSDNTSKHGRH-SHEGHCFRSCVQSVSNTVENDE-DRGIHKSSMNREKDRHDKH 328
           + D   K G H   +G      V+ + + +  D  D G HK   +++K +  KH
Sbjct: 21  KEDEHKKEGEHHKKDGEHKEGVVEKIKDKITGDHGDGGEHKEKKDKKKKKEKKH 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,679,743
Number of Sequences: 37544
Number of extensions: 373599
Number of successful extensions: 1180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)