Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021862
(806 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 60 3e-09
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 4e-09
SB_47029| Best HMM Match : Ldl_recept_b (HMM E-Value=8.2e-28) 54 1e-07
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 5e-06
SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 45 8e-05
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 38 0.007
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_35533| Best HMM Match : Ldl_recept_b (HMM E-Value=9.8e-05) 37 0.022
SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.022
SB_35244| Best HMM Match : Ldl_recept_b (HMM E-Value=3.2e-11) 34 0.16
SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_59093| Best HMM Match : Ldl_recept_b (HMM E-Value=8.1e-06) 30 1.9
SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39) 30 2.5
SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_5725| Best HMM Match : Ldl_recept_b (HMM E-Value=0.019) 29 4.4
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 29 5.9
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32) 29 5.9
SB_44390| Best HMM Match : NHL (HMM E-Value=1.9e-16) 28 7.7
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 28 7.7
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 60.5 bits (140), Expect = 2e-09
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSSQI 182
A+DWVG K+Y AD ++V ELDG ++ S L P+ + LDPT GL ++ +
Sbjct: 788 AIDWVGRKMYWADPGANTIEVSELDGSNTMTLISSGLDKPSAVVLDPTEGLYWIDSKLDV 847
Query: 183 IR-ANMDGTHMKAIVS 227
I+ N++GT ++ +++
Sbjct: 848 IKHCNLNGTEVRVVIN 863
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 59.7 bits (138), Expect = 3e-09
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD--SS 176
AVDWVG LY +S +++ V +LDG ++ ++L+ P +A+DP +G +F D +
Sbjct: 289 AVDWVGRNLYFVESSVRRIYVSKLDGSMRTSLITTDLSKPRGIAVDPRVGYLFWTDWEAH 348
Query: 177 QIIRANMDGTHMKAIVSEAAYKASVI 254
+I RANMDG+ + Y A+ +
Sbjct: 349 RIERANMDGSSRVILAKTNVYWANTL 374
Score = 56.4 bits (130), Expect = 3e-08
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD---S 173
AVDW+G LY +D +++V L+G+W V+L ++ SP L LD G +F D S
Sbjct: 1329 AVDWIGRNLYWSDMRSDRIEVSTLEGKWRRVLLSEDVESPRGLVLDSNAGYLFWTDWGTS 1388
Query: 174 SQIIRANMDGTH 209
++ R+ +DG++
Sbjct: 1389 PRVERSWLDGSN 1400
Score = 55.2 bits (127), Expect = 6e-08
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSS-- 176
A+DWV +Y DS + V DGR+ V+ S L PA +A+DP G +F D
Sbjct: 3547 AIDWVAKNIYFIDSTAHAIMVATADGRYRRTVVSSGLEQPAGIAVDPISGRIFWTDGGYR 3606
Query: 177 -QIIRANMDGTHMKAIVS 227
+++ + +DGT +++V+
Sbjct: 3607 PKVMSSALDGTDPRSLVT 3624
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD---S 173
AVDW+ LY D ++ V L+G + V+ +N+ SP + L P GLMF +D
Sbjct: 593 AVDWLARNLYWTDVDLHEISVAALNGSFRKVLFSNNVKSPRAIVLHPHRGLMFWSDLGYP 652
Query: 174 SQIIRANMDGTHMKAIV 224
+++ + MDGT+ + +V
Sbjct: 653 AKLESSYMDGTNRQVLV 669
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/50 (44%), Positives = 27/50 (54%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLG 152
AVDWV LY +D + K+ V L GR H L NL P L +DP+ G
Sbjct: 2688 AVDWVARNLYFSDRVQDKIMVSTLTGR-HMKTLLDNLGEPRALVVDPSQG 2736
Score = 29.9 bits (64), Expect = 2.5
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +3
Query: 3 AVDWVGDKLYVADS-LGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD--S 173
AVD + +++ D KV LDG ++ S L SPA LA+D +++ AD +
Sbjct: 3590 AVDPISGRIFWTDGGYRPKVMSSALDGTDPRSLVTSELISPAGLAIDHASDVLYWADTRT 3649
Query: 174 SQIIRANMDGTHMKAIVS 227
+I +DG + + S
Sbjct: 3650 GRIDAIGLDGNGRRTVWS 3667
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLAL 137
A+D D LY AD+ ++D LDG V S L P LA+
Sbjct: 3634 AIDHASDVLYWADTRTGRIDAIGLDGNGRRTV-WSGLMQPYSLAV 3677
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 59.3 bits (137), Expect = 4e-09
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQ--KVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD-- 170
AVDW KLY DS + +++V +DGR+ V+ NL P +A+DP G MF D
Sbjct: 241 AVDWCSKKLYWTDSEVETNRIEVSNMDGRFRKVLFWENLGQPRAIAVDPASGYMFWTDWG 300
Query: 171 -SSQIIRANMDGTHMKAIVSE 230
+I RA MDGT IVS+
Sbjct: 301 EEPKIERAGMDGTQRTVIVSK 321
Score = 58.4 bits (135), Expect = 6e-09
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSSQ- 179
AVDW+ LY DS K++V LDG+ +L ++ P L LDP G ++ A+ Q
Sbjct: 820 AVDWIAKNLYWTDSRKHKIEVSRLDGQHRRTLLYKDVWEPRSLTLDPVNGHLYWANGGQD 879
Query: 180 --IIRANMDGTHMKAIVS 227
I RANMDG++ ++S
Sbjct: 880 SSIDRANMDGSNRTKVIS 897
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD---S 173
AVDW+ LY D+ +++V L+G +++ +L P + +DP G M+ D
Sbjct: 558 AVDWIARNLYWTDTGMDRIEVSRLNGTSRKILISEDLWEPRAIVVDPGKGHMYWTDWGEH 617
Query: 174 SQIIRANMDGTHMKAIVSEA 233
+I RA++DG + +V+ +
Sbjct: 618 PKIERADLDGGNRIILVNSS 637
Score = 39.1 bits (87), Expect = 0.004
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWH-AVVLGSNLTSPADLALDPTLGLMFVAD--- 170
A+D G +++ D++ +++VF L VV + P + L P GLMF D
Sbjct: 1080 AIDPYGQQMFWTDAVRNEINVFSLKKMAPLGVVASAKDEMPRSIVLFPEKGLMFWTDVGK 1139
Query: 171 -SSQIIRANMDGTHMKAIVS 227
+I+RA+MDG+ + IVS
Sbjct: 1140 NGPKILRASMDGSFPQPIVS 1159
Score = 35.1 bits (77), Expect = 0.068
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLAL 137
AVD DKLY D+ +K++ +L G V++ +NL +P LA+
Sbjct: 1169 AVDTDRDKLYWTDTAHKKIEFSDLQGAKRTVLVDTNLLTPIGLAI 1213
Score = 33.1 bits (72), Expect = 0.27
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +3
Query: 6 VDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLAL 137
+D+ +K+Y AD+ K++V ++DG VVL SN+ L L
Sbjct: 646 IDYSDNKIYWADAKLDKIEVMDVDGSNRRVVLDSNIRHVFGLTL 689
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = +3
Query: 6 VDWVGDKLYVADSLGQ--KVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSSQ 179
+D V LY A+ GQ +D +DG V+ SN+ P D+ +D GL+F ADS +
Sbjct: 864 LDPVNGHLYWANG-GQDSSIDRANMDGSNRTKVI-SNVKRPTDITIDYKEGLLFWADSER 921
Query: 180 --IIRANMDGTHMKAI 221
I A++ G + + +
Sbjct: 922 KVIECADLHGRNRRTV 937
>SB_47029| Best HMM Match : Ldl_recept_b (HMM E-Value=8.2e-28)
Length = 300
Score = 54.4 bits (125), Expect = 1e-07
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD---S 173
A+DWV +Y DS + V DGR+ V+ S L PA +A+DP G +F D S
Sbjct: 56 AIDWVAKNIYFIDSTAHAIMVATADGRYRRTVVSSGLEQPAGIAVDPISGRIFWTDGGYS 115
Query: 174 SQIIRANMDGTHMKAIVS 227
+++ + +DG +++V+
Sbjct: 116 PKVMSSALDGADPRSLVT 133
Score = 32.7 bits (71), Expect = 0.36
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +3
Query: 3 AVDWVGDKLYVADS-LGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD--S 173
AVD + +++ D KV LDG ++ S L SPA LA+D T +++ AD +
Sbjct: 99 AVDPISGRIFWTDGGYSPKVMSSALDGADPRSLVTSELISPAGLAIDHTSDVLYWADTRT 158
Query: 174 SQIIRANMDGTHMKAIVS 227
+I +DG + + S
Sbjct: 159 GRIDAIGLDGNGRRTVWS 176
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 48.8 bits (111), Expect = 5e-06
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD---S 173
A+DW+G LY D+ ++++ +LD A V+ + L P L LDP G MF D
Sbjct: 1420 ALDWLGRHLYWTDAGTKRIEAAQLDTGIQAPVIMAGLDKPRGLVLDPPNGHMFWTDWGSK 1479
Query: 174 SQIIRANMDGT 206
+I ++NMDGT
Sbjct: 1480 PKIEKSNMDGT 1490
Score = 48.4 bits (110), Expect = 7e-06
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +3
Query: 6 VDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSS--- 176
VDW+G LY DS +++V LDG V++ +L P L L P G MF +D
Sbjct: 1686 VDWIGRNLYWTDSGKGRIEVSRLDGTARKVLIQDDLERPTALVLFPEEGTMFFSDCGSRP 1745
Query: 177 QIIRANMDGT 206
++ +A MDGT
Sbjct: 1746 KMEKAYMDGT 1755
Score = 46.0 bits (104), Expect = 4e-05
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD---S 173
A++W ++Y D + + V LDG V++ S L P +A+ P GLMF D +
Sbjct: 1087 AIEWRTRRIYWTDRTYRFIQVATLDGSRRHVLISSGLDKPRGIAVHPQAGLMFWTDWGEN 1146
Query: 174 SQIIRANMDGTHMKAIVS 227
+I RA +DG + IV+
Sbjct: 1147 PKIERARLDGQKRQEIVT 1164
Score = 44.4 bits (100), Expect = 1e-04
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = +3
Query: 6 VDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD---SS 176
VD++ +Y D +++V LDG+ + G + P + LDP G M+ AD +
Sbjct: 2008 VDYISGNVYWTDPKRGRIEVASLDGKDRLTLTGWSPDKPGAIVLDPVEGRMYWADYGTNP 2067
Query: 177 QIIRANMDGTHMKAIV 224
+I+ A+MDG++ K ++
Sbjct: 2068 KIMTAHMDGSNRKILM 2083
>SB_23513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD--SS 176
AVDW LY + + ++V +LDG + ++ NL P + +DP GLMF D +
Sbjct: 153 AVDWATGLLYWTNRDKKAIEVAKLDGSFRKTLIKDNLVGPKGIVVDPRTGLMFWTDKETP 212
Query: 177 QIIRANMDGTHMKAIVSEA 233
+I RA + G ++V+ A
Sbjct: 213 KIERATLAGRDRISLVTTA 231
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 44.8 bits (101), Expect = 8e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTL 149
A+DW+ + LY D+ +K++V DGR+ V+ NL P L LDP +
Sbjct: 17 ALDWLSNNLYWVDAGAKKIEVSRKDGRYRKVLFKDNLDRPRALVLDPVV 65
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 44.4 bits (100), Expect = 1e-04
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD---S 173
AVDWV KLY D+ ++V LDGR ++ + L P + + P +G MF D
Sbjct: 991 AVDWVNRKLYWTDTGTDVIEVANLDGRERMRLITTGLQEPRAIVVYPAIGYMFWTDWGEE 1050
Query: 174 SQIIRANMDG 203
+I R M+G
Sbjct: 1051 PKIERCGMNG 1060
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 75 DGRWHAVVLGSNLTSPADLALDPTLGLMFVADSSQ--IIRANMDGTHMKAIVSEAAY 239
D + ++ +N+ P L +D T+ ++ AD+ + I AN+DGT + I S++ +
Sbjct: 1061 DPKTRLQIVNTNILWPNALTIDYTIDKIWWADAKEHTIECANLDGTARRVITSDSVH 1117
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 6 VDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLG 152
VDW G K+Y D ++V EL G + S L P + +DP+ G
Sbjct: 369 VDWSGRKIYWTDGEQNMIEVAELTGAHRMTLFSSGLDEPRAIVVDPSAG 417
>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1937
Score = 37.9 bits (84), Expect = 0.010
Identities = 18/64 (28%), Positives = 35/64 (54%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSSQI 182
AVDW+G +Y D+ ++V ++G V++ + L P + +DP G + + + +
Sbjct: 1520 AVDWMGRNIYWTDTGLDVIEVAGMNGSNRRVLISNALDDPRAILVDPPNGDLGLPNGLTL 1579
Query: 183 IRAN 194
+RAN
Sbjct: 1580 VRAN 1583
>SB_35533| Best HMM Match : Ldl_recept_b (HMM E-Value=9.8e-05)
Length = 909
Score = 36.7 bits (81), Expect = 0.022
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLG 152
AVDW LY D +++ + DG+ + ++ + + +P +A+DP+ G
Sbjct: 860 AVDWESSLLYFTDYFYEEIGIVTYDGKRNKTLITAGVANPHGIAVDPSSG 909
>SB_44751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 842
Score = 36.7 bits (81), Expect = 0.022
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD--SS 176
A D V ++Y +D QK+ LDGR ++ +++ P +ALD ++ D
Sbjct: 662 AHDPVDKRVYWSDVGAQKISRAYLDGRGEETIITTDIVVPDGMALDTVERRIYWTDIGRK 721
Query: 177 QIIRANMDGTHMKAI 221
+I RA+ DG+H + +
Sbjct: 722 RIERAHFDGSHREEL 736
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD---S 173
A+D V ++Y D ++++ DG + + L +P + L M+ D +
Sbjct: 705 ALDTVERRIYWTDIGRKRIERAHFDGSHREELERAGLDNPRGIVLARARRQMYWTDWGAN 764
Query: 174 SQIIRANMDGTHMKAIVSEA 233
+I RA+MDG K IVS A
Sbjct: 765 PRIERASMDGGQRKTIVSGA 784
>SB_35244| Best HMM Match : Ldl_recept_b (HMM E-Value=3.2e-11)
Length = 534
Score = 33.9 bits (74), Expect = 0.16
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSP-------ADLALDPTLGLMF 161
AVDWV + LY D +K++V LDG ++L + +A+D T G +F
Sbjct: 103 AVDWVNNHLYWTDETYEKIEVSNLDGTNRLMLLYNKYNGKDKEYAILESIAVDATEGYLF 162
Query: 162 ----VA--------DSSQIIRANMDGTHMKAIVSEAAYKAS 248
VA DS I+R+ + G K I Y S
Sbjct: 163 YINWVATFWGTTYDDSPHIVRSALSGDESKTIFENYPYSYS 203
>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 32.3 bits (70), Expect = 0.48
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -2
Query: 169 SATNMSP--KVGSSARSAGLVRLDPSTTACQRPSSSNTSTFCPSESAT*SLSPTQST 5
S+T +P K S+ +S+G ST A Q P+ S+ ST P++ + SPT+++
Sbjct: 122 SSTGQTPTEKTDSTPKSSGSTLPTSSTPATQNPTDSSLSTKPPTKKTGETQSPTENS 178
>SB_59093| Best HMM Match : Ldl_recept_b (HMM E-Value=8.1e-06)
Length = 69
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDG 80
AVD V DK+Y D +K++V LDG
Sbjct: 9 AVDCVNDKIYWTDETYEKIEVSNLDG 34
>SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39)
Length = 407
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD---S 173
A+DW G +L+ D + V LDG ++G++ P + +DP ++ +
Sbjct: 142 ALDWKGRRLFWTDPGLGTISVIGLDGTGRRALIGTS-GKPRAVLVDPLDDKLYWTEWGQD 200
Query: 174 SQIIRANM-DGTHMKAIVS 227
++I RA + DG+ + +VS
Sbjct: 201 ARITRARLSDGSGKEVLVS 219
>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1660
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 21 DKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDP 143
D +YVADS ++ +F +G + V+ L P +A+ P
Sbjct: 1504 DNIYVADSGNSRLQIFTPEGYYMRKVVSDQLNRPWGVAITP 1544
>SB_5725| Best HMM Match : Ldl_recept_b (HMM E-Value=0.019)
Length = 409
Score = 29.1 bits (62), Expect = 4.4
Identities = 24/79 (30%), Positives = 37/79 (46%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSSQI 182
A+D VG K+Y D + + V ELDG + L +N+ A L +D GL F S
Sbjct: 225 ALDHVGRKVYFTDYFNKNLRVCELDGS-NCKTLKTNVALTA-LEVDSKNGL-FAVRYSAC 281
Query: 183 IRANMDGTHMKAIVSEAAY 239
+R H + +++ Y
Sbjct: 282 LRFVYGSLHSRFYDTKSLY 300
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 28.7 bits (61), Expect = 5.9
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Frame = +2
Query: 179 DNTSKHGRHSHEGHCFRSCVQSVSNTVENDEDRGI------HKSSMNREKDRHDKHKSQT 340
DN K+ + + + S V+SVS E E RG HK S +++K + +H+S+T
Sbjct: 6 DNAGKYSEKEKKLNNYESSVESVSP--ERSERRGKSSKKHKHKHSKSKKKHKKRRHRSRT 63
Query: 341 IPNILQXXXXXXXXXXXANLFKMPLV-QPDITIELNPPKSE 460
+ ++ + PL+ +++ E N KS+
Sbjct: 64 RSKSREKGDTYAEGTLDESVVEGPLLPSVEVSHEKNEQKSQ 104
>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
Length = 1168
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 419 QPDITIELNPPKSEGIRH--HEPPRDALNQARCLLQP 523
QP+IT+ + PPK + +H ++ P N LLQP
Sbjct: 644 QPNITVTITPPKPQHNQHFYNQSPLHHQNHNTTLLQP 680
>SB_44390| Best HMM Match : NHL (HMM E-Value=1.9e-16)
Length = 475
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 24 KLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSSQIIRANMDG 203
K+YV D + +F+ DG + + GSN+ +PA L + D+ ++ +MDG
Sbjct: 371 KIYVVDGQTSRTQIFDADGNYMS-SFGSNV-APAHLMIHNGQAYAVNHDNHEVEVYSMDG 428
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 185 TSKHGRHSHEGHCFRSCVQSVSNTVENDEDRGIHKSSMNREKDRHDKHKSQ 337
TS+HGR H+ + S +R HK+S EK RH+ + +
Sbjct: 91 TSRHGRSRHKTSRHETSRHERSRHETRQHERSRHKTS-RHEKSRHETSRHE 140
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 129 LALDPTLGLMFVAD--SSQIIRANMDGTHMKAIVSEAAYKASV 251
+A+DP M+ +D ++I+ A +DGT+M +VS +A V
Sbjct: 312 MAIDPGCQKMYWSDYEKNRILAAKLDGTYMTKVVSVVNPRAIV 354
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,319,599
Number of Sequences: 59808
Number of extensions: 415598
Number of successful extensions: 1317
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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