Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021862
(806 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 69 5e-12
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 69 5e-12
Z81078-5|CAB03078.2| 722|Caenorhabditis elegans Hypothetical pr... 53 2e-07
Z75535-4|CAA99828.2| 722|Caenorhabditis elegans Hypothetical pr... 53 2e-07
U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical pr... 52 5e-07
U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical pr... 52 5e-07
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 52 5e-07
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass... 43 2e-04
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z48582-5|CAA88467.3| 377|Caenorhabditis elegans Hypothetical pr... 33 0.32
U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein. 31 1.3
U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein rec... 31 1.3
AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor... 31 1.3
AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor medi... 31 1.3
Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical p... 30 2.2
Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical pr... 30 2.2
AF016665-8|AAC71178.1| 324|Caenorhabditis elegans Serpentine re... 29 3.9
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 29 5.2
U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical p... 29 5.2
Z77652-6|CAB01122.1| 357|Caenorhabditis elegans Hypothetical pr... 28 9.0
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 68.5 bits (160), Expect = 5e-12
Identities = 32/84 (38%), Positives = 50/84 (59%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSSQI 182
AVDW+ + LY+ +S +++DV DG V+L LT P D+ALDP G MF + ++
Sbjct: 477 AVDWITNTLYIIESGSRRIDVSSYDGERRTVLLADGLTLPLDIALDPLRGEMFFTNQLKL 536
Query: 183 IRANMDGTHMKAIVSEAAYKASVI 254
A MDGT+ + +V+ ++ S I
Sbjct: 537 EAAAMDGTNRRTLVNTHTHQVSGI 560
Score = 55.6 bits (128), Expect = 4e-08
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFEL-DGRWHAVVLGSNLTSPADLALDPTLGLMFVADSSQ 179
A+DWVG LY DS ++V L D + +++ N++ P +A+DP G+MF D Q
Sbjct: 1561 ALDWVGRNLYWVDSSLNTIEVANLEDPKQRTLLVHQNVSQPRGIAVDPRKGVMFWTDWGQ 1620
Query: 180 ---IIRANMDGTHMKAIVSEAAYKASVI 254
I RA+MDGT + IV Y + I
Sbjct: 1621 NPCIERASMDGTDRQIIVKTKIYWPNTI 1648
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Frame = +3
Query: 3 AVDWVGDKLYVA--DSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSS 176
A+DW+ +Y D+ ++V +LDG + ++L + +P+ +A+DP ++ AD
Sbjct: 2209 AIDWINYNMYFINHDAERTNIEVSKLDGTYRKILLTTKTETPSSIAVDPVSRYLYWADQG 2268
Query: 177 Q---IIRANMDGTHMKAIVS 227
Q I R+ +DG+ + IVS
Sbjct: 2269 QKPTIQRSFLDGSRREVIVS 2288
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSS-- 176
AVDWVG KLY+ + + + V ELDGR+ ++ + P + + P G +F + S
Sbjct: 3396 AVDWVGRKLYMLNRQERSIRVCELDGRFCKTLIRDRIQQPKAIVVHPGKGYLFFTEWSLQ 3455
Query: 177 -QIIRANMDGT 206
I R +DG+
Sbjct: 3456 PYIGRIALDGS 3466
Score = 37.9 bits (84), Expect = 0.008
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Frame = +3
Query: 6 VDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSS--- 176
+DW+ K+Y G KV + G + + + T LA+DP GL+F +DS
Sbjct: 2536 LDWLTQKIYFTTGRGGKVMAIDTAGEHLSTIASGDWTYA--LAIDPCSGLLFWSDSGYKT 2593
Query: 177 -------QIIRANMDGTHMKAIVSEA 233
+I R+N+ G K IVSE+
Sbjct: 2594 SGGLYEPRIERSNLAGGSRKVIVSES 2619
Score = 35.5 bits (78), Expect = 0.045
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFE--LDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSS 176
AVD V LY AD GQK + LDG V++ S + P DL +D +++ +D+
Sbjct: 2254 AVDPVSRYLYWADQ-GQKPTIQRSFLDGSRREVIVSSGIAEPTDLVVDVASKMIYWSDAK 2312
Query: 177 Q--IIRANMDGTHMKAIVSEAAYKASV 251
I R G + + S+ A A V
Sbjct: 2313 MDGIYRVRSTGGTPELVRSDIASAAGV 2339
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +3
Query: 75 DGRWHAVVLGSNLTSPADLALDPTLGLMFVADS---SQIIRANMDGTHMKAIVSEAAY 239
DGR+ ++ +L P L P+ G + +D+ ++I A+MDGTH + IV + +
Sbjct: 4318 DGRYLKKIVAGHLQQPTALITAPSAGRICYSDAGLHAKIECADMDGTHRQIIVKDLVF 4375
Score = 31.1 bits (67), Expect = 0.97
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Frame = +3
Query: 9 DWVGDKLYVADSLGQKVDVFEL--DGRWH--AVV---LGSNLTSPADLALDPTLGLMFVA 167
DW+ +LY D++ ++V ++ G H +V L + L P + + P GL+F A
Sbjct: 805 DWISKQLYYVDNIRNSLEVVKIGETGLVHPDELVRRQLITELRDPVSVVVHPWKGLLFYA 864
Query: 168 DS---SQIIRANMDGTHMKAI 221
++ + I R ++DG + + I
Sbjct: 865 EAMRPAAIYRCHIDGQNCQVI 885
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 68.5 bits (160), Expect = 5e-12
Identities = 32/84 (38%), Positives = 50/84 (59%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSSQI 182
AVDW+ + LY+ +S +++DV DG V+L LT P D+ALDP G MF + ++
Sbjct: 477 AVDWITNTLYIIESGSRRIDVSSYDGERRTVLLADGLTLPLDIALDPLRGEMFFTNQLKL 536
Query: 183 IRANMDGTHMKAIVSEAAYKASVI 254
A MDGT+ + +V+ ++ S I
Sbjct: 537 EAAAMDGTNRRTLVNTHTHQVSGI 560
Score = 55.6 bits (128), Expect = 4e-08
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFEL-DGRWHAVVLGSNLTSPADLALDPTLGLMFVADSSQ 179
A+DWVG LY DS ++V L D + +++ N++ P +A+DP G+MF D Q
Sbjct: 1561 ALDWVGRNLYWVDSSLNTIEVANLEDPKQRTLLVHQNVSQPRGIAVDPRKGVMFWTDWGQ 1620
Query: 180 ---IIRANMDGTHMKAIVSEAAYKASVI 254
I RA+MDGT + IV Y + I
Sbjct: 1621 NPCIERASMDGTDRQIIVKTKIYWPNTI 1648
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Frame = +3
Query: 3 AVDWVGDKLYVA--DSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSS 176
A+DW+ +Y D+ ++V +LDG + ++L + +P+ +A+DP ++ AD
Sbjct: 2209 AIDWINYNMYFINHDAERTNIEVSKLDGTYRKILLTTKTETPSSIAVDPVSRYLYWADQG 2268
Query: 177 Q---IIRANMDGTHMKAIVS 227
Q I R+ +DG+ + IVS
Sbjct: 2269 QKPTIQRSFLDGSRREVIVS 2288
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSS-- 176
AVDWVG KLY+ + + + V ELDGR+ ++ + P + + P G +F + S
Sbjct: 3396 AVDWVGRKLYMLNRQERSIRVCELDGRFCKTLIRDRIQQPKAIVVHPGKGYLFFTEWSLQ 3455
Query: 177 -QIIRANMDGT 206
I R +DG+
Sbjct: 3456 PYIGRIALDGS 3466
Score = 37.9 bits (84), Expect = 0.008
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Frame = +3
Query: 6 VDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSS--- 176
+DW+ K+Y G KV + G + + + T LA+DP GL+F +DS
Sbjct: 2536 LDWLTQKIYFTTGRGGKVMAIDTAGEHLSTIASGDWTYA--LAIDPCSGLLFWSDSGYKT 2593
Query: 177 -------QIIRANMDGTHMKAIVSEA 233
+I R+N+ G K IVSE+
Sbjct: 2594 SGGLYEPRIERSNLAGGSRKVIVSES 2619
Score = 35.5 bits (78), Expect = 0.045
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFE--LDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSS 176
AVD V LY AD GQK + LDG V++ S + P DL +D +++ +D+
Sbjct: 2254 AVDPVSRYLYWADQ-GQKPTIQRSFLDGSRREVIVSSGIAEPTDLVVDVASKMIYWSDAK 2312
Query: 177 Q--IIRANMDGTHMKAIVSEAAYKASV 251
I R G + + S+ A A V
Sbjct: 2313 MDGIYRVRSTGGTPELVRSDIASAAGV 2339
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +3
Query: 75 DGRWHAVVLGSNLTSPADLALDPTLGLMFVADS---SQIIRANMDGTHMKAIVSEAAY 239
DGR+ ++ +L P L P+ G + +D+ ++I A+MDGTH + IV + +
Sbjct: 4318 DGRYLKKIVAGHLQQPTALITAPSAGRICYSDAGLHAKIECADMDGTHRQIIVKDLVF 4375
Score = 31.1 bits (67), Expect = 0.97
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Frame = +3
Query: 9 DWVGDKLYVADSLGQKVDVFEL--DGRWH--AVV---LGSNLTSPADLALDPTLGLMFVA 167
DW+ +LY D++ ++V ++ G H +V L + L P + + P GL+F A
Sbjct: 805 DWISKQLYYVDNIRNSLEVVKIGETGLVHPDELVRRQLITELRDPVSVVVHPWKGLLFYA 864
Query: 168 DS---SQIIRANMDGTHMKAI 221
++ + I R ++DG + + I
Sbjct: 865 EAMRPAAIYRCHIDGQNCQVI 885
>Z81078-5|CAB03078.2| 722|Caenorhabditis elegans Hypothetical
protein F14B4.1 protein.
Length = 722
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSSQ- 179
AVDW+G LY + + V LDGR+ + + +T P + L P G+MFV D S
Sbjct: 399 AVDWIGRNLYSLRR--EDILVQSLDGRFRQPLYKNVMTLPRSITLHPAKGIMFVTDWSAN 456
Query: 180 --IIRANMDGTHMKAIVSE 230
I A+MDG+H + I++E
Sbjct: 457 AFIAAASMDGSHFRKIITE 475
>Z75535-4|CAA99828.2| 722|Caenorhabditis elegans Hypothetical
protein F14B4.1 protein.
Length = 722
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADSSQ- 179
AVDW+G LY + + V LDGR+ + + +T P + L P G+MFV D S
Sbjct: 399 AVDWIGRNLYSLRR--EDILVQSLDGRFRQPLYKNVMTLPRSITLHPAKGIMFVTDWSAN 456
Query: 180 --IIRANMDGTHMKAIVSE 230
I A+MDG+H + I++E
Sbjct: 457 AFIAAASMDGSHFRKIITE 475
>U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical
protein T13C2.6a protein.
Length = 909
Score = 52.0 bits (119), Expect = 5e-07
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD---S 173
AVDWV D L+ D +++V ++ V+ S+L P +A+DP +GL+F D
Sbjct: 575 AVDWVHDLLFWTDGGLDQINVLDMKNGKQRVLYSSDLEEPRAIAVDPEVGLIFWTDWGKK 634
Query: 174 SQIIRANMDGTHMKAIV 224
++I R+ MDG H IV
Sbjct: 635 ARIERSGMDGQHRTVIV 651
>U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical
protein T13C2.6b protein.
Length = 911
Score = 52.0 bits (119), Expect = 5e-07
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD---S 173
AVDWV D L+ D +++V ++ V+ S+L P +A+DP +GL+F D
Sbjct: 577 AVDWVHDLLFWTDGGLDQINVLDMKNGKQRVLYSSDLEEPRAIAVDPEVGLIFWTDWGKK 636
Query: 174 SQIIRANMDGTHMKAIV 224
++I R+ MDG H IV
Sbjct: 637 ARIERSGMDGQHRTVIV 653
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 52.0 bits (119), Expect = 5e-07
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVL-GSNLTSPADLALDPTLGLMFVAD--- 170
AVDW+G +Y D + V ++ GR++ ++L G+ L P + LDP L+F D
Sbjct: 579 AVDWLGRNIYYTDRNHDAIAVCDMRGRFNRILLKGTPLNDPRAIVLDPLQALVFWTDWGA 638
Query: 171 SSQIIRANMDGTHMKAIVSE 230
S+ I R NMDG++ + I+ +
Sbjct: 639 SAHIGRMNMDGSNEQVILQD 658
>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
gene nameprotein 162 protein.
Length = 2643
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD---- 170
AVDW+ +Y DS + V DG A V+ N+ + LA+D G MF D
Sbjct: 1435 AVDWISGNIYWIDSFLDTIQVVSEDGTKRATVINQNMGNARSLAIDVEEGFMFWTDWEES 1494
Query: 171 SSQIIRANMDGTHMKAIV 224
+ +I RA++ G + +AI+
Sbjct: 1495 NPRIERASLAGNN-RAII 1511
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +3
Query: 87 HAVVLGSNLTSPADLALDPTLGLMFVADSSQIIRANMDGTHMKAIVSEAAYKASVI 254
H V++ P ++A+DP G +F A SS I +N GT K IVS+++ A I
Sbjct: 2106 HQVIVEDEDKIPYEIAVDPPKGKLFWASSSCIKSSNYYGTEAKCIVSKSSISAIAI 2161
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVAD---- 170
AVDW +Y ADS+ ++ V L+G++ ++ L +P + LD ++ +D
Sbjct: 1366 AVDWSSRNVYYADSMNDEIGVASLNGKFKKSLVTEGLVNPRSVVLDLYGRHLYYSDWHRE 1425
Query: 171 SSQIIRANMDGTHMKAIVSE 230
+ I R +MDG + + ++E
Sbjct: 1426 NPYIGRVDMDGKNNRVFLNE 1445
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 21 DKLYVADSLGQKVDVFELDGRWHAVVLGSNLTSPADLALDPTLGLMFVADS--SQIIRAN 194
+K+ +D G + L+G H L+SP +A+D + ++ ADS +I A+
Sbjct: 1329 EKIVWSDMSGHSIRTSSLNGTEHKSYFNKELSSPEGIAVDWSSRNVYYADSMNDEIGVAS 1388
Query: 195 MDGTHMKAIVSE 230
++G K++V+E
Sbjct: 1389 LNGKFKKSLVTE 1400
>Z48582-5|CAA88467.3| 377|Caenorhabditis elegans Hypothetical
protein F27E5.5 protein.
Length = 377
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = -2
Query: 391 LVILMRLRLVFL*YIWNGLRFVLIVAVLFTIH*RLMNTSVLIIFYCITDALYAASETM 218
++ ++ L F+ + N + F++I+A T+H N +L+I C+ DA+YA S M
Sbjct: 29 VIYIVELFFCFIAFPLN-IFFIIIIANTTTLH---RNLRILLISTCVADAIYAISRYM 82
>U62639-1|AAD09364.1| 925|Caenorhabditis elegans lr protein.
Length = 925
Score = 30.7 bits (66), Expect = 1.3
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Frame = +3
Query: 3 AVDWVGDKLYVAD---SLGQKVDVFELDGRW-HAVVLGSNL-TSPADLALDPTLGLMFVA 167
AVDW+G ++ S + + + G + V+ G S L + P GL+
Sbjct: 473 AVDWIGGNVFFTQKSPSPSAGISICTMSGMFCRRVIEGKEQGQSYRGLVVHPMRGLIIWI 532
Query: 168 DSSQ----IIRANMDGTHMKAIVSEAAYKASVIQ*KMMRTEVF 284
DS Q I+ ANMDG+ ++ ++ S + +R +V+
Sbjct: 533 DSYQKYHRIMMANMDGSQVRILLDNKLEVPSALAIDYIRHDVY 575
>U62281-1|AAD09363.1| 925|Caenorhabditis elegans lipoprotein
receptor precursor protein.
Length = 925
Score = 30.7 bits (66), Expect = 1.3
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Frame = +3
Query: 3 AVDWVGDKLYVAD---SLGQKVDVFELDGRW-HAVVLGSNL-TSPADLALDPTLGLMFVA 167
AVDW+G ++ S + + + G + V+ G S L + P GL+
Sbjct: 473 AVDWIGGNVFFTQKSPSPSAGISICTMSGMFCRRVIEGKEQGQSYRGLVVHPMRGLIIWI 532
Query: 168 DSSQ----IIRANMDGTHMKAIVSEAAYKASVIQ*KMMRTEVF 284
DS Q I+ ANMDG+ ++ ++ S + +R +V+
Sbjct: 533 DSYQKYHRIMMANMDGSQVRILLDNKLEVPSALAIDYIRHDVY 575
>AF185706-1|AAD56241.1| 925|Caenorhabditis elegans yolk receptor
RME-2 protein.
Length = 925
Score = 30.7 bits (66), Expect = 1.3
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Frame = +3
Query: 3 AVDWVGDKLYVAD---SLGQKVDVFELDGRW-HAVVLGSNL-TSPADLALDPTLGLMFVA 167
AVDW+G ++ S + + + G + V+ G S L + P GL+
Sbjct: 473 AVDWIGGNVFFTQKSPSPSAGISICTMSGMFCRRVIEGKEQGQSYRGLVVHPMRGLIIWI 532
Query: 168 DSSQ----IIRANMDGTHMKAIVSEAAYKASVIQ*KMMRTEVF 284
DS Q I+ ANMDG+ ++ ++ S + +R +V+
Sbjct: 533 DSYQKYHRIMMANMDGSQVRILLDNKLEVPSALAIDYIRHDVY 575
>AF036703-1|AAB88554.3| 925|Caenorhabditis elegans Receptor
mediated endocytosis protein2 protein.
Length = 925
Score = 30.7 bits (66), Expect = 1.3
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Frame = +3
Query: 3 AVDWVGDKLYVAD---SLGQKVDVFELDGRW-HAVVLGSNL-TSPADLALDPTLGLMFVA 167
AVDW+G ++ S + + + G + V+ G S L + P GL+
Sbjct: 473 AVDWIGGNVFFTQKSPSPSAGISICTMSGMFCRRVIEGKEQGQSYRGLVVHPMRGLIIWI 532
Query: 168 DSSQ----IIRANMDGTHMKAIVSEAAYKASVIQ*KMMRTEVF 284
DS Q I+ ANMDG+ ++ ++ S + +R +V+
Sbjct: 533 DSYQKYHRIMMANMDGSQVRILLDNKLEVPSALAIDYIRHDVY 575
>Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVV-----LGSNLTSPADLALDPTLGLMFVA 167
AVD +G +YVAD +V VF+ +G++ A L L SP +A+ ++V+
Sbjct: 812 AVDDLGS-IYVADKDNHRVQVFDKNGQFIAKFGSFGHLPGQLNSPLFIAVSRVTHHVYVS 870
Query: 168 DSS 176
DSS
Sbjct: 871 DSS 873
>Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = +3
Query: 3 AVDWVGDKLYVADSLGQKVDVFELDGRWHAVV-----LGSNLTSPADLALDPTLGLMFVA 167
AVD +G +YVAD +V VF+ +G++ A L L SP +A+ ++V+
Sbjct: 812 AVDDLGS-IYVADKDNHRVQVFDKNGQFIAKFGSFGHLPGQLNSPLFIAVSRVTHHVYVS 870
Query: 168 DSS 176
DSS
Sbjct: 871 DSS 873
>AF016665-8|AAC71178.1| 324|Caenorhabditis elegans Serpentine
receptor, class h protein250 protein.
Length = 324
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = -2
Query: 430 YVWLYKRHFEQISLVILMRLRLVFL*YIWNGLRFVLIVAVLFTIH*RLMNTSVLIIFYC 254
Y + Y+ Q + ++ M L+ VF+ +L+ V+F H +++N ++I+F C
Sbjct: 224 YKYSYRTVRVQKNFLVSMSLQFVFIMTFMFIPCVLLLYIVIFKYHNQILNNFIIILFSC 282
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -2
Query: 145 VGSSARSAGLVRLDPSTTACQRPSSSNTSTFCPSESAT*SLSPTQSTA 2
+G+S + +++ +PST++ PSSS P + AT + TQS+A
Sbjct: 1 MGASTATVAIIQSEPSTSSSSSPSSSR-----PEDGATVGNTFTQSSA 43
>U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical
protein C33G8.2 protein.
Length = 390
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +2
Query: 194 HGRHS---HEGHCFRSCVQSVSNTVENDEDRGIHKSSMNREK-DRHDKHKSQ 337
HGRH H GH R+ S S++ ++ ED+ K +++K + DK K +
Sbjct: 89 HGRHGMGRHGGHGRRNKSGSDSDSSDSSEDKKKRKQMRDKKKQEEEDKKKEE 140
>Z77652-6|CAB01122.1| 357|Caenorhabditis elegans Hypothetical
protein C06B3.9 protein.
Length = 357
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = -2
Query: 385 ILMRLRLVFL*YIWNGLRFVLIVAVLFTIH*RLMNTSVLIIFYCITDALYAASETMA 215
IL R+ F + N L +LIV ++F H ++ L+I+ I + +YA +T A
Sbjct: 7 ILQRISAFFA--VLNNL--ILIVLIIFKSHKKIGKYKYLMIYISIFEIIYAILDTCA 59
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,545,475
Number of Sequences: 27780
Number of extensions: 311708
Number of successful extensions: 1129
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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