Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021862
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   1.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   4.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.8  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   7.7  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 539 RHQYLHVCLSPSLILNLNR*GKCLPSDGYT 628
           +H YLH   SP+  + L + G+ L S   T
Sbjct: 96  KHSYLHTITSPNKFVRLYQDGRVLYSSRLT 125


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 210 CECRPCLLVLSDCYQQ 163
           C+C  CLL + D YQ+
Sbjct: 106 CKCDDCLLGIVDDYQR 121


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 21  DKLYVADSLGQKVDVFELDG 80
           D  Y+ D  G+K+D++  +G
Sbjct: 341 DSGYLIDEYGKKIDIYTPEG 360


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 21  DKLYVADSLGQKVDVFELDG 80
           D  Y+ D  G+K+D++  +G
Sbjct: 341 DSGYLIDEYGKKIDIYTPEG 360


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 221 CFRSCVQSVSNTVENDE 271
           CF +C    S+ ++NDE
Sbjct: 77  CFITCALEKSHIIQNDE 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,992
Number of Sequences: 438
Number of extensions: 3879
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)