Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021862
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09460.1 68414.m01058 glucan endo-1,3-beta-glucosidase-relate...    29   2.7  
At5g48020.1 68418.m05934 expressed protein                             29   3.6  
At1g11120.1 68414.m01273 expressed protein                             29   3.6  
At4g00300.1 68417.m00037 fringe-related protein + weak similarit...    28   6.3  

>At1g09460.1 68414.m01058 glucan endo-1,3-beta-glucosidase-related
           similar to glucan endo-1,3-beta-glucosidase precursor
           SP:P52409 from [Triticum aestivum]
          Length = 330

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = -2

Query: 160 NMSPKVGSSARSAGLVRLDPSTTACQRPSSSNTSTFCPSESAT*SLSPTQST 5
           N SP+      +A LV  +PST +C   + S+TST  P  + T   +PT ST
Sbjct: 192 NPSPQSCDFGGAASLVNTNPSTGSCIYQTGSSTST--PMTAGT--TTPTPST 239


>At5g48020.1 68418.m05934 expressed protein
          Length = 355

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 600 PYRFRFRIRLGDRHTWRYWWRRSYRPGWSR 511
           P  ++  I  G  H WRY WR   RP  +R
Sbjct: 108 PNEYKPHIPKGPDHKWRYMWRVGPRPSNTR 137


>At1g11120.1 68414.m01273 expressed protein
          Length = 367

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 163 TNMSPKVGSSARSAGLVRLDPSTTACQRPSS-SNTSTFCPSESAT*SLSPTQS 8
           T+MSP+  ++   AG VRL PS T  +  +  S   +  P+ + +  + PT+S
Sbjct: 249 TDMSPRKRNNEEEAGSVRLVPSATGTRDSTERSERRSRSPAMNRSVMMGPTRS 301


>At4g00300.1 68417.m00037 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 785

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 321 ISTNLRPFQIYYRNTSLSRIRITRLICSKCLLYNQT 428
           IS++   F+  YRN   S IRITR++     + N T
Sbjct: 136 ISSDTSSFKYRYRNGHRSAIRITRIVSETVRMLNGT 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,666,519
Number of Sequences: 28952
Number of extensions: 288505
Number of successful extensions: 838
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)