Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021861
         (841 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   4.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   5.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.2  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   9.2  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 195 LLFTSGNLPPDDSLKDFPVNKP 130
           LL  SGN P   S   +P N P
Sbjct: 57  LLSPSGNTPNKSSTSPYPPNHP 78


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 442 LGSVSGNDETKDSK 483
           L S   NDETKD K
Sbjct: 131 LSSFESNDETKDGK 144


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 471 ERQQTAKQGAAEEFQRHFPQSDQRRR 548
           +R ++  +G     Q+H PQSD R +
Sbjct: 10  KRGRSTGRGLKYSGQQHGPQSDSRNQ 35


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 828 SGPSSTRASSVCT 790
           SGP++T  SS CT
Sbjct: 22  SGPNATLQSSACT 34


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,612
Number of Sequences: 336
Number of extensions: 4018
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)