Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021861
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    52   1e-07
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    30   0.36 
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.62 
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    26   5.8  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    26   7.6  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 20/63 (31%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = +1

Query: 601 LYITKNYFAFYSNVFGYVTKLLIPTTSVLRITKEKVARIIPNAVGVCTRDERHVSGRY-S 777
           +Y+++++  F S++FG+VT ++IP T ++ + K+  A + PNA+ + T   R++   + S
Sbjct: 230 MYLSESHICFNSSIFGWVTNIVIPVTEIVSVEKKSTAVVFPNAIQITTLHARYIFASFIS 289

Query: 778 RGT 786
           R T
Sbjct: 290 RDT 292



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = +3

Query: 768 SLLSRDSTYKLMMHVWK 818
           S +SRD+TY+L++ +WK
Sbjct: 286 SFISRDTTYQLIIAIWK 302



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 479 ANSQARRG-RRVPEALPAVGPEEKVLNYYSCALVGDLLL 592
           ANS+  R   R+ + LP   PE+ +++ Y CAL  D+ L
Sbjct: 191 ANSKRNRDFHRIFKVLP---PEDHLIDDYGCALQRDIFL 226


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 23/110 (20%), Positives = 47/110 (42%)
 Frame = +1

Query: 349 LQLEPHPRSAKHEKQAVKPLSGSAPSVRVSALGSVSGNDETKDSKQPSKARQKXXXXXXX 528
           L+ E   ++A+H K  V  L  +      + + + +GND      +P+K  ++       
Sbjct: 240 LEFEFWSQAAQHYKLDVNSLRNAYNLYAETGVTTRTGNDGGSPINRPAKRVKRQNHIPKC 299

Query: 529 XXXXXEGAQLLFVCTCRRSPPASHLYITKNYFAFYSNVFGYVTKLLIPTT 678
                EG+ L+  C C+ +    H    +  FA +S++  +     IP++
Sbjct: 300 KLCAQEGSSLVTCCICQSN---YHYACVEAPFAPFSDIHYWTCNSCIPSS 346


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 343 TPLQLEPHPRSAKHEKQAVKPLSGSAPSVRVSALGSV-SGNDETKDSKQPS 492
           TPL+  P     ++  +  K  SGSA S   +  GSV SGN+ +  S+ PS
Sbjct: 113 TPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNGSVFSGNEASPSSRAPS 163


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 423 VSPRVGTGLCIRER*DERQQTAKQGAAEEFQRHFPQSDQRRRCSI 557
           + P+V       ER DE      + A  +F +H  + + R RCSI
Sbjct: 74  IYPKVSNNGTENERSDELYVEIDKVAESDFLKHLKKYNLRSRCSI 118


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 297 GRGGWRVWGAPFR 335
           GRGG  +WG PF+
Sbjct: 335 GRGGQSIWGKPFK 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,417,025
Number of Sequences: 5004
Number of extensions: 68354
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)