Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021861
(841 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0442 + 18261928-18261957,18264217-18264279,18264847-182648... 54 2e-07
11_04_0354 + 16697571-16700256,16700335-16700759 33 0.37
09_03_0059 + 11961088-11961474,11962039-11962131 33 0.37
03_03_0274 - 16089322-16089365,16089604-16089616,16090367-160907... 32 0.49
01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958... 32 0.65
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 31 1.1
06_01_0928 - 7159857-7159922,7159923-7160024,7160126-7160206,716... 31 1.5
11_04_0433 + 17700273-17700468,17700650-17700765,17702214-17702549 30 2.6
05_03_0627 - 16342211-16342264,16342332-16342412,16342751-163428... 30 2.6
12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160 29 4.6
07_01_0053 + 413900-414119,414241-414254 29 4.6
02_01_0325 - 2208480-2208674,2208772-2210609,2210980-2211109,221... 29 6.1
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525... 28 8.1
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 28 8.1
02_05_0071 + 25595374-25595422,25595526-25595596,25596531-255965... 28 8.1
01_06_0894 - 32781957-32782287,32783019-32783284,32783771-327840... 28 8.1
01_06_0765 - 31808775-31809443,31809547-31809703,31809777-318098... 28 8.1
>07_03_0442 +
18261928-18261957,18264217-18264279,18264847-18264897,
18265937-18266002,18266813-18266908,18266985-18267086,
18267200-18267297,18267409-18267581,18267695-18267735,
18267823-18267910,18268025-18268084,18268206-18268260,
18268617-18268683,18269260-18269356,18269659-18269720,
18269808-18269850,18270002-18270111,18270477-18270713
Length = 512
Score = 53.6 bits (123), Expect = 2e-07
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +1
Query: 598 HLYITKNYFAFYSNVFGYVTKLLIPTTSVLRITKEKVARIIPNAVGVCTRDERHVSGRY 774
H+Y+ ++ FYSN+FGY TK IP V + K K A I NA+ + +RH G +
Sbjct: 50 HMYLFLHHICFYSNIFGYETKKTIPLQEVTDVRKAKTAAIFHNAIEIIAGTKRHFFGSF 108
>11_04_0354 + 16697571-16700256,16700335-16700759
Length = 1036
Score = 32.7 bits (71), Expect = 0.37
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -3
Query: 203 HSGSFSLPEIYHQTTASKISPSISLLTFLILIQLAGQPLQGE 78
H ++ + ++ A ISPSI LTFL ++ L+G L GE
Sbjct: 47 HKHRVTVLNLSSESLAGTISPSIGNLTFLKILDLSGNNLDGE 88
>09_03_0059 + 11961088-11961474,11962039-11962131
Length = 159
Score = 32.7 bits (71), Expect = 0.37
Identities = 20/45 (44%), Positives = 24/45 (53%)
Frame = -3
Query: 596 LAGGDRRQVHTNNN*APSPLVRLREVPLELFCRALLGCLLSFVSS 462
+AGGDRR+ T AP PL R + L C LLG L F S+
Sbjct: 1 MAGGDRRKRRTEGVVAPPPLGAERRL---LSCLFLLGALFGFASA 42
>03_03_0274 -
16089322-16089365,16089604-16089616,16090367-16090714,
16090771-16090974,16091403-16091504,16091710-16091741,
16092668-16093655,16094461-16094711,16095786-16097795,
16097903-16097954
Length = 1347
Score = 32.3 bits (70), Expect = 0.49
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -3
Query: 179 EIYHQTTASKISPSISLLTFLILIQLAGQPLQGE 78
++ + + + +I PSI LT L+L+ LAG L GE
Sbjct: 410 DLSYNSLSGEIPPSIGNLTLLLLLMLAGNQLSGE 443
>01_07_0019 +
40494709-40494767,40495619-40495703,40495777-40495836,
40495934-40496044,40496127-40496204,40496276-40496347,
40496944-40497057,40498034-40498538,40499011-40499108,
40499185-40499215,40499346-40499520,40499849-40500008,
40501436-40501855,40502313-40503203
Length = 952
Score = 31.9 bits (69), Expect = 0.65
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 5 SRECPDQNKPRTDLHSKKSAKRVSLHLEEADQPVELRSKKS 127
S++ + ++P +L SKK K+VS +E+D V+ +KK+
Sbjct: 285 SQDTEEDDEPEVELESKKVVKKVSKSSKESDVTVDKTTKKA 325
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = -1
Query: 580 ADKCTRIIIEHLLLWSDCGKCLWNSSAAPCLAVCCLSSHRSRIQSPVP-TRGLTEPILIK 404
A C R + E + GKC WN + V + H R+ VP T + EP I
Sbjct: 529 AASCARCVQESA---RELGKCCWNMQSGGVATVIGYNCH-LRLDVSVPMTPSVAEPQSIP 584
Query: 403 ALRPVFHVSLSGGEVR 356
A P V +GG VR
Sbjct: 585 A--PTVSVRTTGGHVR 598
>06_01_0928 -
7159857-7159922,7159923-7160024,7160126-7160206,
7160289-7160384,7160462-7160566,7160648-7160722,
7161372-7161431,7161960-7162090,7162175-7162250,
7163390-7163459,7163603-7163664,7163788-7163871,
7163973-7164047,7164448-7164585,7164733-7164791,
7164910-7165123,7167996-7168091,7168701-7169639
Length = 842
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 270 LSNGQCPFAGFLLLASEMTENLSLRLLFTSGN 175
LSN ++GF +A + EN LR LF +GN
Sbjct: 527 LSNNTIEYSGFASIAEALLENNVLRSLFVNGN 558
>11_04_0433 + 17700273-17700468,17700650-17700765,17702214-17702549
Length = 215
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 246 QKDIDH*KDLVNRQFRIGRGGWRVWGAPFRSRHPSAARTSPPLSET 383
+K+ H +D + G G WR+ G + PSAA T PL ET
Sbjct: 78 RKENSHPRDYESNH-AAGDGFWRLAGTEKNNGSPSAAHTHAPLVET 122
>05_03_0627 -
16342211-16342264,16342332-16342412,16342751-16342849,
16343660-16343770,16343964-16344116,16344741-16344881,
16345456-16345513,16345852-16345967,16346292-16346405,
16346496-16346557,16348788-16348930,16349030-16349097,
16349200-16349379,16349835-16350013,16350447-16350636,
16350920-16350978,16351421-16351574,16352133-16352158,
16352567-16353014
Length = 811
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 397 VKPLSGSAPSVRVSALGSVSGNDETKDSKQPS 492
+KP S +P SA SV G+DE D+KQP+
Sbjct: 179 IKPNSPKSPVASASAFESVEGSDE-DDAKQPN 209
>12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160
Length = 1054
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 203 HSGSFSLPEIYHQTTASKISPSISLLTFLILIQLAGQPLQG 81
H G + E+ ISPS+S L+FL + L+G L G
Sbjct: 82 HPGRVTALELMSSNLMGVISPSLSNLSFLHTLNLSGNRLTG 122
>07_01_0053 + 413900-414119,414241-414254
Length = 77
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +3
Query: 291 RIGRGGWRVWGAPFRSRHPSAARTSPP 371
R G GG R G+ +RS SAA TSPP
Sbjct: 7 RGGGGGRRGGGSKWRSSRASAAATSPP 33
>02_01_0325 -
2208480-2208674,2208772-2210609,2210980-2211109,
2211231-2211270,2211409-2211531,2211940-2212030,
2212396-2212480,2212565-2212720,2212797-2212853,
2212940-2213110,2213313-2213330,2213479-2213551,
2213754-2213839,2214348-2214466,2214542-2214641
Length = 1093
Score = 28.7 bits (61), Expect = 6.1
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 213 LSFLMQVARSLQKDID 260
LSFL QVA S+QKD+D
Sbjct: 151 LSFLFQVAASMQKDVD 166
>11_06_0388 + 23048576-23051546,23051830-23052371,23052444-23052517,
23053006-23053090,23053281-23053367,23053585-23053657,
23053882-23053925,23054041-23054169,23054301-23054402,
23054529-23054585
Length = 1387
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 303 GGWRVWGAPFRSRHPSAARTSPPLSET 383
GGWR+W PF + + T P+SE+
Sbjct: 1083 GGWRIW--PFSFKRTRSVNTVQPVSES 1107
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 601 LYITKNYFAFYSNVFGYVTKLLIPTTSVLRITKEKVARIIP 723
+Y++ + F+SNVF K+++P + I + + A I P
Sbjct: 270 MYVSSWHICFHSNVFSKQIKVMLPLRDIDEIRRSQHAVINP 310
>02_05_0071 +
25595374-25595422,25595526-25595596,25596531-25596579,
25597026-25597098,25597175-25597466
Length = 177
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 349 LQLEPHPRSAKHEKQAVKPLSGSAPS-VRVSALGSVSGNDETKDSKQPS 492
L++EP P+S ++ +K + G P +VS+ + ND+ K S + S
Sbjct: 70 LRVEPKPKSDIRQQDLLKNIVGIKPKRTKVSSPSQPAENDKPKQSPEDS 118
>01_06_0894 -
32781957-32782287,32783019-32783284,32783771-32784040,
32785007-32785134,32785284-32785893
Length = 534
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +1
Query: 364 HPRSAKHEKQAVKPLSGSAPSVRVSALG---SVSG 459
HPR A VK GSA +RVSA G S+SG
Sbjct: 68 HPRGAGDVAALVKAAYGSASGIRVSARGHGHSISG 102
>01_06_0765 -
31808775-31809443,31809547-31809703,31809777-31809894,
31810170-31810308
Length = 360
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 5 SRECPDQNKPRTDLHSKKSAKRVSLHLEEADQPVELRSKK-SEGLLTGKSLRLSSGGRFP 181
S + D++ PR+ LH KK A LE V+ KK E L T ++ + +
Sbjct: 123 SPKLADRHSPRSPLHEKKRAGTRVAELETKLGKVQDELKKLREQLATAEAAKKDAQVALE 182
Query: 182 EVKRSLSDRFSVISDASS 235
E K+ + + S S A++
Sbjct: 183 EAKKRVGTKGSPASAAAA 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,515,583
Number of Sequences: 37544
Number of extensions: 502270
Number of successful extensions: 1679
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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