Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021861
(841 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32563| Best HMM Match : GRAM (HMM E-Value=2.8e-11) 57 2e-08
SB_36875| Best HMM Match : TP2 (HMM E-Value=2.9) 37 0.023
SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.054
SB_56208| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_8505| Best HMM Match : CitD (HMM E-Value=0.91) 33 0.29
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.38
SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44) 32 0.67
SB_42534| Best HMM Match : DUF699 (HMM E-Value=0) 30 2.0
SB_43995| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27) 29 3.6
SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007) 29 4.7
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_15524| Best HMM Match : GDA1_CD39 (HMM E-Value=2.6e-05) 29 4.7
SB_13198| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_25219| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_32563| Best HMM Match : GRAM (HMM E-Value=2.8e-11)
Length = 204
Score = 56.8 bits (131), Expect = 2e-08
Identities = 22/52 (42%), Positives = 38/52 (73%)
Frame = +1
Query: 601 LYITKNYFAFYSNVFGYVTKLLIPTTSVLRITKEKVARIIPNAVGVCTRDER 756
+YI++++ FYSN+FG+ T++ I VL IT+EK A ++PNA+ + T D++
Sbjct: 153 IYISQDWVCFYSNIFGWETQVTIDCRKVLSITREKTAYVVPNAILITTEDDK 204
>SB_36875| Best HMM Match : TP2 (HMM E-Value=2.9)
Length = 234
Score = 36.7 bits (81), Expect = 0.023
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +1
Query: 667 IPTTSVLRITKEKVARIIPNAVGVCTRDERHVSGRYSRGT 786
I + V+ I KEK A +IPNA+ + T ++ S R SRGT
Sbjct: 100 INCSEVISIRKEKTALVIPNAIQISTEEKSISSRRSSRGT 139
>SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1183
Score = 35.5 bits (78), Expect = 0.054
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +1
Query: 580 RSPPASHLYITKNYFAFYSNVFGYVTKLLIPTTSVLRITKEKVARIIPNAVGVCTRD 750
R P LY++ N+ FYS + G +L+I T V + + + ++P+ + V TRD
Sbjct: 127 RVPRQGWLYLSVNHLCFYSFLMGKEARLVIRWTDVTSLERTN-SVLLPDGIKVATRD 182
>SB_56208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 658 KLLIPTTSVLRITKEKVARIIPNAVGVCTRDER 756
K+ I VL IT+EK A ++PNA+ + T D++
Sbjct: 48 KVTIDCRKVLSITREKTAYVVPNAILITTEDDK 80
>SB_8505| Best HMM Match : CitD (HMM E-Value=0.91)
Length = 909
Score = 33.1 bits (72), Expect = 0.29
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 541 LWSDCGKCLWNSSAAPCLAVCCLSSHRSRIQSPVPTRGLTEPILIKALRPV 389
LW + GK LWNSS + S HRS+ QS + + ++ L+ V
Sbjct: 517 LWLELGKWLWNSSPRKESCIKFTSIHRSQSQSCLSIKSTNMSVIASPLQEV 567
>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 32.7 bits (71), Expect = 0.38
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +2
Query: 38 TDLHSKKSAKRVSLHLEEADQPVELRSKKSEGLLTGKSLRLSSGGRFP 181
TD K K + +E D ++R K +G LTGK+L GRFP
Sbjct: 15 TDNDKKDGGKNNPISVERGDIIFDVR-KLDDGWLTGKNLNTGRSGRFP 61
>SB_30592| Best HMM Match : MAM (HMM E-Value=2.66247e-44)
Length = 667
Score = 31.9 bits (69), Expect = 0.67
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = -2
Query: 156 LKDFPVNKPSDFFDLNSTGWSASSR*RDTLLALFLECKSVRG 31
L +F VNK ++ DL +T S R RDT L L L+ RG
Sbjct: 85 LLEFTVNKGNEIADLKTTTHSILRRLRDTELGLLLKALESRG 126
>SB_42534| Best HMM Match : DUF699 (HMM E-Value=0)
Length = 739
Score = 30.3 bits (65), Expect = 2.0
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Frame = +2
Query: 41 DLHSKKSAKRVSLHLEEADQPVELRSKKS-EGLLTGKSLRLSSGGRFPEVKRSLSDR--F 211
D+H + AK ++ LEEA + +E++ KK E L + G+ + + +LS +
Sbjct: 440 DVHMEPLAKSLNQDLEEAAKEMEVKQKKELEKLKLVDFSEYAISGKEDDWQEALSGKGTH 499
Query: 212 SVISDASSKKPAK--GH*PLERLGQPAI 289
+++S SSK+ + P++ LG P +
Sbjct: 500 NLVSIPSSKRKSLIIAQLPIKSLGHPFV 527
>SB_43995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +2
Query: 17 PDQNKPRTDLHSKKSAKRVSLHLEEADQPVELRSKKSEGLLTGKSLRLSSGG 172
P +++ TDL SK S ++ S +EE D + + K E L G R S GG
Sbjct: 111 PPESRGSTDLSSKTSKRQASEVIEEGDLGIYPKRVKLEECLDG--ARESDGG 160
>SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)
Length = 228
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 50 SKKSAKRVSLHLEEADQPVELRSKKS-EGLLTGKSLRLSSGGRFPEVKRSLSDRFSVISD 226
+K+ + L E A++ + KKS +G T KS +++S + P+VK+S
Sbjct: 101 AKERKLQKQLEKEAAEEEKVKKPKKSRDGEKTKKSKKVTSEPKSPKVKKSKDKSTKTTKK 160
Query: 227 ASSKKPAK 250
+ +K P K
Sbjct: 161 SDAKSPKK 168
>SB_17567| Best HMM Match : DnaJ (HMM E-Value=0.0007)
Length = 831
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 219 MTENLSLRLLFTSGNLPPDDSLKDFPVNKPSDFFD 115
++ N S L+T+ N P + L D P N SDF D
Sbjct: 133 VSSNSSNCTLYTAANQPEEGHLSDLPPNNFSDFGD 167
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 29.1 bits (62), Expect = 4.7
Identities = 25/106 (23%), Positives = 42/106 (39%)
Frame = -1
Query: 586 EIADKCTRIIIEHLLLWSDCGKCLWNSSAAPCLAVCCLSSHRSRIQSPVPTRGLTEPILI 407
EI D C + ++ G C ++ C C H R ++ R L +
Sbjct: 4434 EIRDFCALASVNGPACFNG-GVCTNTPTSYTC--TCARGFHGRRCEAGCGFRELGIRVPN 4490
Query: 406 KALRPVFHVSLSGGEVRAAEGWRERNGAPHTRHPPRPMRNCRLTKS 269
+ P H+S S R +R R G R P+P+++ R+ +S
Sbjct: 4491 EYRVPDIHMSSSSHRDRNHAAFRARIGMQEVRRKPQPLKDKRIIRS 4536
>SB_15524| Best HMM Match : GDA1_CD39 (HMM E-Value=2.6e-05)
Length = 405
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 260 VNVLLQASCYLHQK*QKIYHSGSFSLPEIYHQTT 159
+ + +SC+L + QK+ + + +P+ YHQTT
Sbjct: 57 IKAAMNSSCHLVEALQKLTKAATKVIPKSYHQTT 90
>SB_13198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -3
Query: 530 LREVPLELFCRALLGCLLSFVSSFPDTEPSADTRTD 423
+ V L++ C LL C+L VS F D EPS+ R++
Sbjct: 126 MARVDLKIIC--LLICILVVVSYFADAEPSSRRRSN 159
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 517 LWNSSAAPCLAVCCLSSHRSRIQSPVPTRGLTEPILIKALR 395
LWNS+ +PC+ V L+ + + + R LT L + ++
Sbjct: 1770 LWNSALSPCVYVIFLADFKQAFMTFIACRSLTRQSLQETIQ 1810
>SB_25219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = +2
Query: 20 DQNKPRTDLHSKKSAKRVSLHLEEADQPVELRSKKSEGLLTGKSLRLSS 166
D P+ L ++++ + S H E +D P + ++ ++ L T ++LRL S
Sbjct: 62 DTQNPQIPLQTRRTLRLPSRHAEPSDSPPDTQNPQT-SLQTRRTLRLPS 109
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,715,355
Number of Sequences: 59808
Number of extensions: 549981
Number of successful extensions: 3625
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3623
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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