Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021861
         (841 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02120.1 68414.m00138 GRAM domain-containing protein-related ...    52   6e-07
At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM dom...    31   0.72 
At2g30400.1 68415.m03702 ovate family protein 57% similar to ova...    29   3.8  
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ...    29   5.1  
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains...    29   5.1  
At2g34357.1 68415.m04206 expressed protein                             28   6.7  
At2g22480.1 68415.m02667 phosphofructokinase family protein simi...    28   6.7  
At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM dom...    28   8.9  
At2g48050.1 68415.m06014 expressed protein ; expression supporte...    28   8.9  
At2g41160.1 68415.m05084 ubiquitin-associated (UBA)/TS-N domain-...    28   8.9  
At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7) c...    28   8.9  

>At1g02120.1 68414.m00138 GRAM domain-containing protein-related
           contains low similarity to PF02893: GRAM domain
          Length = 556

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 20/54 (37%), Positives = 33/54 (61%)
 Frame = +1

Query: 598 HLYITKNYFAFYSNVFGYVTKLLIPTTSVLRITKEKVARIIPNAVGVCTRDERH 759
           H+Y+  +Y  FYSN+FGY TK +IP   +  + + K A I PNA+ +    +++
Sbjct: 130 HMYLFIHYICFYSNIFGYETKKIIPFAEISCVKRAKTAGIFPNAIEILAGGKKY 183


>At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM
           domain-containing protein low similarity to SP|P40748
           Synaptotagmin III (SytIII) {Rattus norvegicus}; contains
           Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
          Length = 1027

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 577 RRSPPASHLYITKNYFAFYSNVFGYVTK 660
           R+ P    L+++    AFYSNVFG+ TK
Sbjct: 716 RKLPVQGKLFLSARIVAFYSNVFGHKTK 743


>At2g30400.1 68415.m03702 ovate family protein 57% similar to ovate
           protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 320

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 17  PDQNKPRTDLHSKKSAKRVSLH 82
           P  N PR  LH+KK +KR +L+
Sbjct: 67  PHHNSPRNSLHTKKMSKRKTLY 88


>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
           zinc dependent protease [Arabidopsis thaliana]
           GI:7650138; contains Pfam profile PF00004: ATPase AAA
           family
          Length = 855

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 403 ALRPVFHVSLSGGEVRAAEGWRERNGAPHTRHPPRPMR 290
           AL  +  V L  GE++A E W   N AP  R P +P+R
Sbjct: 729 ALEEITDVLLEKGEIKADEIWNIYNTAP--RIPQKPVR 764


>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family associated with
           various cellular activities (AAA)
          Length = 636

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +2

Query: 20  DQNKPRTDLHSKKSAKRVSLHLEEADQPVELRSKKSEGLLTGKSLRLSSG 169
           D N   ++L  KK ++++++  +  DQ ++  +KK+EG    +  +L +G
Sbjct: 543 DSNLKWSNLFKKKKSQKITIEGDLTDQVIKEAAKKTEGFSGREIAKLVAG 592


>At2g34357.1 68415.m04206 expressed protein
          Length = 1280

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 26/77 (33%), Positives = 34/77 (44%)
 Frame = +2

Query: 20   DQNKPRTDLHSKKSAKRVSLHLEEADQPVELRSKKSEGLLTGKSLRLSSGGRFPEVKRSL 199
            DQ+K R  L S +  KR +   EEA+  VE R    EG    +S R        + K S 
Sbjct: 1110 DQHKTRLALRSSELRKRKADSDEEAEFDVEGRLVIREG---ERSKRKELSDADSDAKSSK 1166

Query: 200  SDRFSVISDASSKKPAK 250
              RFS  S   ++K  K
Sbjct: 1167 GSRFSGNSSKKNQKRMK 1183


>At2g22480.1 68415.m02667 phosphofructokinase family protein similar
           to phosphofructokinase [Amycolatopsis methanolica]
           GI:17432243; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 537

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -1

Query: 466 HRSRIQSPVPTRGLTEPILIKALRPVFHVSLSGGEVRAAE 347
           +++   S VP+ GLT  IL K+  PV   S S   VRA+E
Sbjct: 16  YKNNSSSLVPSHGLTSLILRKSRSPVNPSSRSRVSVRASE 55


>At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM
           domain-containing protein low similarity to GLUT4
           vesicle protein [Rattus norvegicus] GI:4193489; contains
           Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
          Length = 594

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 601 LYITKNYFAFYSNVFGYVTKLLIPTTSVLRITKEKVARIIP 723
           +Y++  +  F+SNVF    K+++P   +  I + + A I P
Sbjct: 261 MYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINP 301


>At2g48050.1 68415.m06014 expressed protein ; expression supported
           by MPSS
          Length = 1500

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +2

Query: 68  RVSLHLEEADQPVELRSKKSEGLLTGKSLRL--SSGGRFPEVKRSLSDRFSVISDASSKK 241
           RV LH   +D    + S ++EGL   KS  L   SG   PE+   +  +     D  S+ 
Sbjct: 783 RVQLHRMNSDSNFGVASPRTEGLRRRKSPYLIPDSGAASPEIDGVVHRKEEQPIDEDSQY 842

Query: 242 PAKGH 256
           P + H
Sbjct: 843 PFEAH 847


>At2g41160.1 68415.m05084 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 287

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +2

Query: 131 GLLTGKSLRLSSGG----RFPEVKRSLSDRFSVISDASSKKPAKGH*PLERLGQPAI 289
           G++ G   RL+  G    +FPE   SL  RFS+ S +S  +P +   P   LG+ A+
Sbjct: 178 GIIAGSLYRLNIFGIRKAKFPEFMASLFSRFSLPSLSSHSQPPRRTSP--NLGRQAV 232


>At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7)
           contains Pfam profiles: PF05033: Pre-SET motif, PF00856
           SET domain; identical to cDNA SUVH7 (SUVH7) GI:13517754
          Length = 693

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -2

Query: 813 TRASSVCT*SPARVATRH-VSLIPGTHADRIRYYTGHFLL 697
           T AS  CT    +  TR  +  +PG H   I YY G   L
Sbjct: 207 TTASGNCTKMGVKTNTRRRIGAVPGIHVGDIFYYWGEMCL 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,345,333
Number of Sequences: 28952
Number of extensions: 377812
Number of successful extensions: 1187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)