Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021859
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 90 3e-19
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2... 42 1e-04
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 40 3e-04
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 37 0.004
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 37 0.004
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 34 0.027
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 33 0.035
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 32 0.11
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 31 0.14
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 31 0.19
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p... 29 0.57
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 29 0.76
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 29 1.00
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 29 1.00
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 28 1.3
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 28 1.3
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 27 3.0
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 27 4.0
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 4.0
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo... 27 4.0
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 27 4.0
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 26 5.3
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 26 5.3
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 26 7.0
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 9.3
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 90.2 bits (214), Expect = 3e-19
Identities = 40/84 (47%), Positives = 57/84 (67%)
Frame = +1
Query: 256 TAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGF 435
+A+ PLDL+KCR QV+ Y + GFK + +EG+RGL G PT IGYS+QG K+GF
Sbjct: 39 SAITPLDLIKCRKQVNPNIYPGNIAGFKTILSKEGLRGLYTGGMPTLIGYSLQGCGKYGF 98
Query: 436 YEVFKVAYAGMLDDETAYTYRTFV 507
YE+FK Y+ ++ + A+ YRT +
Sbjct: 99 YELFKHKYSTLVGAQKAHEYRTSI 122
Score = 64.5 bits (150), Expect = 2e-11
Identities = 33/47 (70%), Positives = 37/47 (78%), Gaps = 1/47 (2%)
Frame = +3
Query: 510 LAASASAEFIADIALSPMEAAKVRIQTM-PGFASTLREAWPKMVKNE 647
LAASASAE +ADI L PMEA KVR+QT P FA+T REAW K+V NE
Sbjct: 124 LAASASAELLADIMLCPMEAIKVRVQTSNPRFANTTREAWSKIVTNE 170
Score = 54.4 bits (125), Expect = 2e-08
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = +2
Query: 650 YGTFYKGLVPLWGRQIPYTMMKFACFER 733
+GT Y+GL PLW RQIPYTMMKFA FER
Sbjct: 172 FGTLYRGLAPLWFRQIPYTMMKFASFER 199
>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 41.9 bits (94), Expect = 1e-04
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +1
Query: 268 PLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYEVF 447
P+ +VK R+ Y N GF ++ EG+RG G+AP+ +G S QG +F YE
Sbjct: 118 PIWVVKSRILSKRVNYTNPFFGFYDLIKNEGLRGCYAGFAPSLLGVS-QGALQFMAYEKL 176
Query: 448 KV 453
K+
Sbjct: 177 KL 178
Score = 31.5 bits (68), Expect = 0.14
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 268 PLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYE 441
PL +++ RLQV +++++N + R +G+ G KG+ P + Q F YE
Sbjct: 206 PLLVIRTRLQVMRSPHRSIMNLVLQTWRLQGILGFYKGFLPHLLRVVPQTCITFLVYE 263
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 40.3 bits (90), Expect = 3e-04
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Frame = +1
Query: 256 TAVVPLDLVKCRLQV-------DAEK--YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYS 408
T P +++K R Q+ D K YK+V F + R EG+RGL +G ++
Sbjct: 39 TLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQAFSLIARHEGIRGLQRGLGTAYVYQI 98
Query: 409 MQGLCKFGFYE-VFKVAYAGMLDD 477
C+ GFYE + + LDD
Sbjct: 99 CLNGCRLGFYEPIRRTLNTWFLDD 122
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +1
Query: 268 PLDLVKCRLQVDAEK--------YKNVVNGFKVSVREEGVRGLAKG 381
P LVK R+Q + K YK++ N F ++E GV+GL G
Sbjct: 148 PFFLVKTRMQSYSPKFPVGQQYGYKHIFNAFSRIIKENGVKGLFVG 193
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 36.7 bits (81), Expect = 0.004
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 256 TAVV-PLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFG 432
TA+ P D++K R+Q++ YKN ++ K+ EG RG G+ + S+ +
Sbjct: 225 TAITNPFDMLKTRVQLEPHIYKNFLHSAKLVYANEGFRGFLDGFFLRVLRKSISSTITWS 284
Query: 433 FYE 441
YE
Sbjct: 285 VYE 287
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 36.7 bits (81), Expect = 0.004
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Frame = +1
Query: 262 VVPLDLVKCRLQVDAE--------KYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQG 417
V LD + RL DA+ ++ +V+ ++ + R +G+RGL +G+ P+ +G +
Sbjct: 150 VYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYR 209
Query: 418 LCKFGFYEVFK-VAYAGMLD 474
FG Y+ K V G L+
Sbjct: 210 GLYFGMYDTLKPVVLVGPLE 229
Score = 29.1 bits (62), Expect = 0.76
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Frame = +1
Query: 256 TAVVPLDLVKCRLQVDAE---------KYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYS 408
TA P++ VK +Q E +YK + FK + EEGV L +G + Y
Sbjct: 43 TAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTANVLRYF 102
Query: 409 MQGLCKFGFYEVFK 450
F F + FK
Sbjct: 103 PTQALNFAFKDKFK 116
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 33.9 bits (74), Expect = 0.027
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Frame = +1
Query: 262 VVPLDLVKCRLQVDAEKY-----KN--VVNGFKVSVR----EEGVRGLAKGWAPTFIGYS 408
V PLD+VK R Q Y KN V+ G S+R EG+ GL +G P +GY
Sbjct: 23 VAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMMLGYL 82
Query: 409 MQGLCKFGFYEVFKVAY 459
F YE KV +
Sbjct: 83 PSWSIYFVVYEKCKVLF 99
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 313 YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYEVFK 450
Y N + F+ + EG+ +G P+ G G+ +F YE FK
Sbjct: 230 YNNTFDAFRKIYKYEGLAAFYRGLFPSLFGTLHVGI-QFPLYEYFK 274
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 33.5 bits (73), Expect = 0.035
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +1
Query: 268 PLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYEVF 447
PLD +K R Q + + + F+ +V+ EG++GL +G I ++ F Y+
Sbjct: 37 PLDSIKVRQQT--YNFPTIRSCFQNAVKNEGLKGLYRGLTLPLISATLSRSVSFTVYDSL 94
Query: 448 KVAYA 462
K+ +A
Sbjct: 95 KLTFA 99
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 31.9 bits (69), Expect = 0.11
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +1
Query: 232 CSVMRSDPTAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSM 411
C++ SD + P D++K R+Q+ + KYK+ ++ R EG+ + PT I S+
Sbjct: 122 CAITISD-AFMTPFDVIKQRMQLPSRKYKSALHCATTVFRNEGLGAFYISY-PTCIAMSI 179
Score = 26.2 bits (55), Expect = 5.3
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Frame = +1
Query: 256 TAVVPLDLVKCRLQ----VDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLC 423
+ + P+D +K R+Q V N+VN EGV L +G + +G
Sbjct: 35 SVMYPVDAIKTRMQMLNGVSRSVSGNIVNSVIKISSTEGVYSLWRGISSVIMGAGPSHAI 94
Query: 424 KFGFYEVFK 450
F E FK
Sbjct: 95 YFSVLEFFK 103
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 31.5 bits (68), Expect = 0.14
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Frame = +1
Query: 259 AVVPLDLVKCRLQVDA----EKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCK 426
A P D+VK ++Q D YKN K + G+RG +G+ P + +
Sbjct: 229 AAYPFDIVKSKIQTDGFLSKATYKNSWQCAKGIYTKAGLRGFYRGFVPVLVRAAPANAVT 288
Query: 427 FGFYE 441
F YE
Sbjct: 289 FYVYE 293
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 31.1 bits (67), Expect = 0.19
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +1
Query: 247 SDPTAVVPLDLVKCRLQVDAEK--YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGL 420
S+ + PLD+VK R+Q+ K Y + K V+ EG L +G P + + +
Sbjct: 21 SEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILMEAPKRA 80
Query: 421 CKFGFYEVF 447
KF + +
Sbjct: 81 LKFASNDTY 89
>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 29.5 bits (63), Expect = 0.57
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 262 VVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYE 441
+ PLD++K ++ + E Y+ VV +E G+ G KG S+ G YE
Sbjct: 185 LTPLDVIKTQINLRPESYRKVVRRI---YKENGIFGFEKGLGLRVFASSLGLSIYLGTYE 241
Query: 442 VFK 450
K
Sbjct: 242 HVK 244
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 29.1 bits (62), Expect = 0.76
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 268 PLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGW 384
PL+++K R Q+ + +V+N R EG++G +G+
Sbjct: 103 PLEVIKARTQISQKG--SVINTISTLARSEGLKGFYRGY 139
Score = 25.4 bits (53), Expect = 9.3
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Frame = +1
Query: 256 TAVVPLDLVKCRLQV-------------DAEKYKNVVNGFKVSVREEGVRGLAKGWAPTF 396
T PLD+VK R QV AEK ++ K+ + GV+G +G
Sbjct: 189 TISTPLDIVKTRYQVATSSAMRKAEYGLQAEKELGILEIAKLLFSKHGVKGFTRGLFTRM 248
Query: 397 IGYSMQGLCKFGFYEVFK 450
G+ +E FK
Sbjct: 249 CYIMPSGMISMSVFESFK 266
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 28.7 bits (61), Expect = 1.00
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 308 SASTWRRHFTRSRGTTAVGSDRMTEHHQLRKERNI 204
S S+ R S GTT GSDR TE+ + E +
Sbjct: 9 SGSSRARRSVLSYGTTETGSDRYTENSNIATENGV 43
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 28.7 bits (61), Expect = 1.00
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +1
Query: 265 VPLDLVKCRLQVDAEKYK 318
+P+DLV RL++DA++YK
Sbjct: 137 LPVDLVPIRLEIDADRYK 154
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -3
Query: 419 RPCIEYPMKVGA---HPLARPRTPSSRTDTLKPFTT 321
RP E P+ G HPL RP PSS + P++T
Sbjct: 154 RPLPETPVSPGGSLVHPLPRPPLPSSVSSHSSPYST 189
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 769 GLAQHTGTAAQGAFEASKLHHRVRDLSAP 683
G+ H+GT G + A L H+ DLSAP
Sbjct: 800 GVIVHSGTLNYGHYVAYVLSHKFLDLSAP 828
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = +2
Query: 605 EHPPRGVAEDGQERSYGTFYKGLVPLWGRQIPYTMMKFACFERTLSCCTSML 760
E PPR V + ER G Y +VPL ++ T C ++L
Sbjct: 292 EKPPRIVIYEASERLGGHIYTHMVPLSDNEVSEKSSLATTVNATNECMVNLL 343
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 349 REEGVRGLAKGWAPTFIGYSMQGLCKFGFYE 441
+ EG+ GL +G+ P S Q F FYE
Sbjct: 293 KSEGLLGLFRGFGPRIFWTSSQSSLMFVFYE 323
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 328 NGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGF 435
+ F++ + V G + W P + G+CK GF
Sbjct: 1105 SNFQIPMHVRSVHGWSCQWGPREDSMLLSGICKHGF 1140
>SPAC12B10.09 |||S-adenosylmethionine transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 345
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 498 YLRVLAASASAEFIADIALSPMEAAKVRIQTMPGF 602
+ L A A D++L P++ K R+Q GF
Sbjct: 82 FFEALGAGICAGLAVDLSLFPIDTLKTRLQAKGGF 116
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +3
Query: 147 VAWRRLLRYPRSPVN---LDRLNISLFAELVVFCH 242
+AW+ +YP P+ D ++L+AEL++ H
Sbjct: 302 IAWKYFYQYPAPPIGNDIFDLPTLNLYAELLLLDH 336
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 310 KYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYEV 444
KY ++ FK+ E+G+ GL G + FG YEV
Sbjct: 311 KYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILFGSYEV 355
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 268 PLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKG 381
P+D V LQ YK+ + F R G++GL +G
Sbjct: 212 PVDTVVKTLQTFPSNYKSFKDCFLSIYRNSGIKGLYRG 249
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +1
Query: 256 TAVVPLDLVKCRLQVD-----AEKYKNVVNGFKVSVREEGVRGLAKGWAPTFI 399
T P D+++ R QV+ YKN+ + + EG+ G +G++ +
Sbjct: 242 TLTFPADVLRRRFQVNRIPGIGHNYKNIKSAIFHIYKTEGINGFFRGYSSNML 294
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 770 GLGTTYWYSSSRCVRSKQTSSSCTGSVCPRAAPGPCRTCRNFVLD 636
GL + Y +RC R+ SS S+CPR R +V+D
Sbjct: 633 GLKESVLYDIARCCRADIISSIDKLSLCPRLGTCGRFQLRTYVVD 677
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,076,357
Number of Sequences: 5004
Number of extensions: 62638
Number of successful extensions: 236
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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