Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021859
(787 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26) 138 4e-33
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 49 5e-06
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 45 6e-05
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 44 1e-04
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0) 40 0.002
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31) 39 0.004
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.009
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.012
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 37 0.016
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.065
SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.065
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.26
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.26
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 33 0.35
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.35
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.35
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 33 0.35
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.46
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 32 0.61
SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 30 1.8
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 30 1.8
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 30 2.4
SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17) 29 3.2
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 29 3.2
SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_28178| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_25940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 29 4.3
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_9851| Best HMM Match : Hint (HMM E-Value=1.30321e-43) 29 5.6
SB_48488| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_23703| Best HMM Match : TTL (HMM E-Value=0) 28 7.5
SB_51790| Best HMM Match : TTL (HMM E-Value=0) 28 7.5
SB_10272| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 28 9.9
SB_51941| Best HMM Match : fn3 (HMM E-Value=2.1e-11) 28 9.9
SB_5593| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26)
Length = 205
Score = 138 bits (335), Expect = 4e-33
Identities = 60/82 (73%), Positives = 73/82 (89%)
Frame = +1
Query: 256 TAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGF 435
TAVVPLDLVKCR+QVD +KY ++VNGFK++++E+GVRGLA+GWAPTFIGYSMQGL KFGF
Sbjct: 71 TAVVPLDLVKCRIQVDPKKYGSMVNGFKITLKEDGVRGLARGWAPTFIGYSMQGLGKFGF 130
Query: 436 YEVFKVAYAGMLDDETAYTYRT 501
YEVFK+ Y ML +E +Y YRT
Sbjct: 131 YEVFKIMYGNMLGEEYSYLYRT 152
Score = 72.5 bits (170), Expect = 4e-13
Identities = 35/46 (76%), Positives = 39/46 (84%)
Frame = +3
Query: 510 LAASASAEFIADIALSPMEAAKVRIQTMPGFASTLREAWPKMVKNE 647
LAASASAEF ADIAL+PMEA KVRIQT PG+A TLRE PK++K E
Sbjct: 156 LAASASAEFFADIALAPMEAVKVRIQTQPGWAGTLREGVPKLMKEE 201
Score = 47.2 bits (107), Expect = 2e-05
Identities = 26/58 (44%), Positives = 33/58 (56%)
Frame = +2
Query: 41 MFSSLLDAARNSPFRGPLSPAQCQSTVAPVAIEQTGGMAASAAVPTESCEFGSPKYFA 214
MFS + A+NS PLS A+C S V + + + ASAA SCEFGS KY+A
Sbjct: 1 MFSRYFETAKNSTLGDPLSVAKCPSDVR--SHRNSSRLMASAAGEQHSCEFGSAKYYA 56
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 48.8 bits (111), Expect = 5e-06
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 268 PLDLVKCRLQV-DAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYEV 444
PLD+V+ RL + +KY ++N F R+EG+R +G+ PT IG F YE
Sbjct: 9 PLDMVRARLAITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYET 68
Query: 445 FKVAYAGMLD 474
K A+ D
Sbjct: 69 CKKAFGEFYD 78
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 45.2 bits (102), Expect = 6e-05
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = +1
Query: 268 PLDLVKCRLQVDAE----KYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGF 435
PLD+V+ R+Q++ KY + +GFKV VR EG GL KG P + + +F
Sbjct: 701 PLDVVRRRMQMERGEGMFKYSSTWDGFKVIVRSEGFIGLFKGMWPNLLKVAPTIGIQFAV 760
Query: 436 YEVFKVA-YAGM 468
YEV K A YA M
Sbjct: 761 YEVSKSAMYARM 772
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 44.4 bits (100), Expect = 1e-04
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Frame = +1
Query: 256 TAVVPLDLVKCRLQ-----VDAEK-YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQG 417
TAV P+DLVK R+Q ++AEK YKN ++ F VR EG GL +G P +G S +
Sbjct: 929 TAVYPIDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLLGVSPEK 988
Query: 418 LCK 426
K
Sbjct: 989 AIK 991
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 41.5 bits (93), Expect = 7e-04
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 256 TAVVPLDLVKCRLQVDAEKYK--NVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKF 429
TA PLD +K LQV A +V+GFK+ +RE G++ L +G I + + KF
Sbjct: 152 TATAPLDRLKVLLQVQASSTNRFGIVSGFKMMLREGGIKSLWRGNGANVIKIAPESGIKF 211
Query: 430 GFYEVFK 450
YE K
Sbjct: 212 FAYEKAK 218
Score = 37.5 bits (83), Expect = 0.012
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +1
Query: 256 TAVVPLDLVKCRLQV-DAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFG 432
T++ PL+++K RL + +Y+ +++ V ++EG+R +G P+ +G
Sbjct: 246 TSIYPLEVLKTRLAIRKTGQYRGLLHAASVIYQKEGIRSFYRGLFPSLLGIIPYAGIDLA 305
Query: 433 FYEVFKVAYAGMLDDETA 486
YE K Y +++A
Sbjct: 306 VYETLKNFYLNYHKNQSA 323
Score = 33.9 bits (74), Expect = 0.15
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +1
Query: 259 AVVPLDLVKCRLQVDAEKY-----KNVVNGFKVSVREEGVRGLAKGWAPTFI 399
A PL LV+ RLQ A + N+V+ + + E+G +GL +G AP F+
Sbjct: 344 ASYPLSLVRTRLQAQAREKGGGQGDNMVSVLRKIITEDGFKGLYRGLAPNFL 395
>SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 421
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 256 TAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTF 396
T P D++K R+ + Y+ V F ++V EG+ L KGW PT+
Sbjct: 316 TISTPADVIKTRIMNNPSGYQGAVECFMLAVHREGLLSLYKGWLPTW 362
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Frame = +1
Query: 268 PLDLVKCRLQVDAEKY--------KNVVNGFKVSVREEGVRGLAKGWAP 390
P DLVK ++Q++ + + + F+ V + G RGL KGW P
Sbjct: 151 PTDLVKVQMQMEGRRLSFYPISSVRGTFHAFRNIVDKYGFRGLWKGWLP 199
>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
Length = 233
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 268 PLDLVKCRLQVDAEK--YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYE 441
P +L+K RLQV + Y ++ F +R EGVRGL KG+ + G G C YE
Sbjct: 35 PANLIKIRLQVQRKTTLYNGSLDAFTKVIRTEGVRGLYKGYLVSCAGL-FAGQCYITTYE 93
Query: 442 VFK 450
+ +
Sbjct: 94 LVR 96
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 37.9 bits (84), Expect = 0.009
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Frame = +1
Query: 256 TAVVPLDLVKCRLQV-----DAEKYKNVVNGFKVSVREEGV-RGLAKGWAPTFIGYSMQG 417
T PLD+V+ R+Q+ D KY +N F E+G+ RGL +G + ++ Q
Sbjct: 122 TLAYPLDVVRRRMQLAGTVADGHKYSTCINTFISVYTEDGIRRGLYRGLSINYLRVCPQV 181
Query: 418 LCKFGFYEVFK 450
F YEV K
Sbjct: 182 AVMFAVYEVVK 192
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 37.5 bits (83), Expect = 0.012
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Frame = +1
Query: 256 TAVVPLDLVKCRLQV-----DAEKYKNVVNGFKVSVREEGVR-GLAKGWAPTFIGYSMQG 417
T PLD+V+ R+Q+ D KY +N +++G+R GL +G + ++ Q
Sbjct: 188 TIAYPLDVVRRRMQLAGAVPDGHKYNTCINTLVNVYKDDGIRRGLYRGLSINYLRVCPQV 247
Query: 418 LCKFGFYEVFK 450
FG YEV K
Sbjct: 248 AIMFGVYEVTK 258
Score = 35.1 bits (77), Expect = 0.065
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Frame = +1
Query: 268 PLDLVKCRL--QVDAEK-YKNVVNGFK-VSVREEGVRGLAKGWAPTFIGYSMQGLCKFGF 435
PLD+V+ RL QV ++ Y + + +SV+E G + L KG+ PT + ++ GF
Sbjct: 84 PLDMVRSRLAFQVAQDQGYTTITQTIRCISVKEGGPKALYKGFVPTLL--TIVPAMGIGF 141
Query: 436 YEVFKVAYAGMLDDETAYT 492
Y +F+ A L+ A+T
Sbjct: 142 Y-MFETMKAYFLETRIAFT 159
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 37.1 bits (82), Expect = 0.016
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Frame = +1
Query: 250 DPTAVV-PLDLVKCRLQVDAEK--------------YKNVVN-GFKVSVREEGVRGLAKG 381
D T+V P+++VK R+Q+D E YK ++ G REEGVRGL +G
Sbjct: 19 DKTSVTNPIEVVKIRMQLDNELGSKHNSKDIFRERYYKGLIRTGLSRVYREEGVRGLYRG 78
Query: 382 WAPTFIGYSMQGLCKFGFYEVFKVAYAGMLDDETAYTYRTFVS 510
P + ++ + G YE K G D +A ++ V+
Sbjct: 79 IFPALLRQAIYSSTRLGAYEPIK-NLLGATDSTSAALWKKIVA 120
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +1
Query: 268 PLDLVKCRLQV----DAEKYKNVVNGFKVSVREEGVRGLAKGWAPT 393
P DLVK R Q + YKN+ + F ++EG GL G PT
Sbjct: 134 PTDLVKIRFQAVKIGETIPYKNMFHAFYKIAKKEGFLGLWTGMKPT 179
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Frame = +1
Query: 268 PLDLVKCRLQVDAEK-------YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCK 426
P+D+V+ R + Y+ ++ +VR EG+ L KG+ P + + +
Sbjct: 231 PVDIVRTRFMTQPKDTKGRPLVYQGTLDCIYKTVRHEGILALYKGFFPNWTRTGLDTIII 290
Query: 427 FGFYEVFKVAYAGM 468
F YE + YAG+
Sbjct: 291 FFVYERLR-RYAGL 303
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 37.1 bits (82), Expect = 0.016
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = +1
Query: 256 TAVVPLDLVKCRLQVDAEK----YKNVVNGFKVSVREEGVRGLAKGWAPTFI 399
TA PLD+V+ R+Q+ + YK+ ++ F V+ EG RGL KG P +
Sbjct: 177 TATYPLDVVRRRMQMKGIRADFAYKSTLHAFSSIVKLEGFRGLYKGMWPNIL 228
Score = 33.9 bits (74), Expect = 0.15
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 256 TAVVPLDLVKCRLQVDAE--KYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKF 429
T+V PL+ VK LQ+ + K+K V+ +EEG+ G KG I +F
Sbjct: 50 TSVSPLERVKILLQIQVKNPKFKGVLPTLIQIGKEEGILGYFKGNGTNVIRIFPYSAVQF 109
Query: 430 GFYEVFKVAYA 462
YE +K A
Sbjct: 110 AAYEEYKKGIA 120
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 35.1 bits (77), Expect = 0.065
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +1
Query: 262 VVPLDLVKCRLQVDAEK-----YKNVVNGFKVSVREEGVRGLAKGWAPTFIG 402
V P +++K RL V YK + + K +REEG+ L KG P+F+G
Sbjct: 170 VYPCEVIKTRLTVQHVNKSNAHYKGMRHALKTILREEGILALYKGVTPSFLG 221
>SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1938
Score = 35.1 bits (77), Expect = 0.065
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 289 RLQVDA-EKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYEV 444
R + DA +K GF ++ +EEG L K T YS++GL KF FYEV
Sbjct: 909 RTKPDATDKVYGEFQGFNITYKEEGGGTLYKTADHTKRSYSIKGLKKFTFYEV 961
>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 612
Score = 33.1 bits (72), Expect = 0.26
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 232 CSVMRSDPTAVV--PLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGY 405
C +M +VV P D+VK RLQ++ Y + + G+ GL +G P +
Sbjct: 529 CGIMAGAMASVVTQPADVVKTRLQMNPYMYPSNRAAVVAIIEAGGIEGLFRGLVPRTVRR 588
Query: 406 SMQGLCKFGFYE 441
++ + YE
Sbjct: 589 TLMSAMAWTIYE 600
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 33.1 bits (72), Expect = 0.26
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = +1
Query: 268 PLDLVKCRLQVDAEKYKNVVN--GFKVSVR----EEGVRGLAKGWAPTFIGYSMQGLCKF 429
PLD+V+ RL V +++ N G ++R EEG+RGL KG P+ + + +
Sbjct: 48 PLDVVRARLTVQDMSTRSISNYTGIVSALRRIHIEEGIRGLYKGLVPSLVSIAPFLGVQQ 107
Query: 430 GFYEVFKV 453
Y++ K+
Sbjct: 108 SVYDIMKL 115
>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1829
Score = 32.7 bits (71), Expect = 0.35
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = -2
Query: 261 GRGVRPHDRTPPTPQRAKYLGDPNSQDSVGTAADAAMPPVCSIATGATVDWHWAGDSG 88
G + H P P RA L P + S G+ A+ A PP +ATG + + SG
Sbjct: 805 GCSEKHHSLLHPPPGRASQL--PLQEQSSGSRAEEASPPPALVATGPSASYRLPNASG 860
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 32.7 bits (71), Expect = 0.35
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +1
Query: 268 PLDLVKCRLQVDAEKYKNVVNGFKVSVR----EEGVRGLAKGWAPTFI 399
P + +KC LQV+A + +G V+ EEGVRG+ +G PT I
Sbjct: 140 PAERIKCILQVEAGASGSTQSGPYAIVKRIYAEEGVRGIFRGLPPTMI 187
Score = 32.3 bits (70), Expect = 0.46
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Frame = +1
Query: 268 PLDLVKCRLQV-------DAEKYKNVVNGFKVSVREEGVRGLAKG 381
PLDL+K RLQ + +K ++ F +VR EG+RGL KG
Sbjct: 40 PLDLLKVRLQAMNQVKPGETAPFKGAMDCFMKTVRLEGLRGLYKG 84
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 11/55 (20%)
Frame = +1
Query: 262 VVPLDLVKCRLQVDA-----------EKYKNVVNGFKVSVREEGVRGLAKGWAPT 393
++P D++K R+QV ++Y V + F+ ++EEG GL KG AP+
Sbjct: 47 ILPFDIIKKRIQVQGFEEARQSFGRVQQYDGVKDCFRTILKEEGAMGLFKGLAPS 101
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +1
Query: 262 VVPLDLVKCRLQVDAEK-----YKNVVNGFKVSVREEGVRGLAKGWAPTFI 399
V P +++K RL V YK + + K +REEG+ L KG P+F+
Sbjct: 439 VYPCEVIKTRLTVQHVNKSNAHYKGMRHALKTILREEGILALYKGVTPSFL 489
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 32.3 bits (70), Expect = 0.46
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +1
Query: 262 VVPLDLVKCRLQVD----AEKYKNVVNGFKVSVREEGVRGLAKGWAPT 393
+ PLD VKC LQ++ Y V+ + RE GVRG+ KG + T
Sbjct: 155 LTPLDRVKCILQIEKAFGGSSYGGPVDCLRRIYREAGVRGVYKGISVT 202
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 31.9 bits (69), Expect = 0.61
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +1
Query: 259 AVVPLDLVKCRLQ----VDAE-KYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLC 423
A +P+D+ K R+Q +D + +YK ++ VR EGV L KG+ P + +
Sbjct: 110 ASMPVDIAKTRIQNMRIIDGKPEYKGTMDVLARIVRNEGVFALWKGFTPYYFRIGPHTVL 169
Query: 424 KFGFYE 441
F F E
Sbjct: 170 TFIFLE 175
>SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -2
Query: 252 VRPHDRTPPTPQRAKYLGD--PNSQDSVGTAADAAMPPVCSIATGATVD 112
VRPHD+ P Q+++Y+ D NS + + A P V S +D
Sbjct: 39 VRPHDQVSPRQQQSQYIHDLLNNSYPIIPKVGEPASPYVSSPRESVLID 87
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 256 TAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGW-APTFI 399
TA PLD +K RLQ A ++ +V+ EGVRGL KG AP +
Sbjct: 85 TAGQPLDTIKVRLQ--ASFGAGPLDMLARTVKTEGVRGLYKGMLAPVLV 131
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -2
Query: 252 VRPHDRTPPTPQRAKYLGD--PNSQDSVGTAADAAMPPVCSIATGATVD 112
VRPHD+ P Q+++Y+ D NS + + A P V S +D
Sbjct: 1620 VRPHDQVSPRQQQSQYIHDLLNNSYPIIPKVGEPASPYVSSPRESVLID 1668
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 259 AVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGW 384
A+ P++++K RLQ+ Y+ V++ +EEG+R + +
Sbjct: 14 AMNPIEVIKQRLQMYGSPYRGVIHCATSVFKEEGIRAFYRSY 55
>SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17)
Length = 187
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = +1
Query: 268 PLDLVKCRLQVDAEK---------YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGL 420
PL++VK R+Q+ E Y+NV + + EG+ + KG P I +
Sbjct: 24 PLEVVKTRMQLQGELKSRGTYSVYYRNVFHASYTIAKYEGILAMQKGLFPALIYQVIMNG 83
Query: 421 CKFGFYEV 444
+ G Y++
Sbjct: 84 TRLGSYQI 91
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +1
Query: 268 PLDLVKCRLQVDAE----KYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGL 420
P D++K R+Q D +YK +++ S +EEG+ +G PT + +Q L
Sbjct: 152 PFDVIKSRIQADGNLGKFRYKGMMDCALQSYKEEGMIVFTRGIWPTLLRGFLQVL 206
>SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 195 PNSQDSVGTAADAAMPPVCSIATGATVDWHWAGD-SGPRNGEFRAASSNEENIIM 34
P Q T A PPV +G+ D W GD S P+ + R+ N +M
Sbjct: 398 PQPQKPPATRPSATPPPVTGDESGSDYDEDWGGDWSEPKPTQSRSIVGEMRNDLM 452
>SB_28178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/64 (34%), Positives = 32/64 (50%)
Frame = +1
Query: 514 RRLRRRNSSPTSPCRPWRRLRSVSKPCLVSRAPSARRGRRWSRTKLRHVLQGPGAALGQT 693
++ R R+SSP+ R RR RS S+ VSR+PS R S L+ +Q +G +
Sbjct: 9 KKNRSRSSSPSERSRRRRRDRSASRS--VSRSPSPGRTSMSSSQVLQVKMQERYFKIGAS 66
Query: 694 DPVH 705
H
Sbjct: 67 SHTH 70
>SB_25940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 109 PVDGRARGYRADRWHGGVCCG 171
P +G+ RG+R GGVCCG
Sbjct: 91 PREGQIRGFRFVHISGGVCCG 111
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Frame = +1
Query: 268 PLDLVKCRLQVDAEK--------YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLC 423
P+DL K ++QV + Y+NV + + G+RG +G + T +
Sbjct: 221 PIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGCYQGLSATLVRNIPANGF 280
Query: 424 KFGFYEVFK 450
FGFYE K
Sbjct: 281 FFGFYEFTK 289
>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 268 PLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFY 438
P D +K ++Q KN ++ + ++EG +GL G P+ + F FY
Sbjct: 29 PFDTIKVKMQTFPSMSKNALDCGIKTFKQEGFKGLYAGTIPSLAANIAENSFLFLFY 85
>SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 107 CQSTVAPVAIEQTGGMAASAAVPTES 184
C ST PV +QT A+SA VPT S
Sbjct: 154 CLSTARPVTTQQTKKPASSAFVPTTS 179
>SB_9851| Best HMM Match : Hint (HMM E-Value=1.30321e-43)
Length = 493
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = -2
Query: 240 DRTPPTPQRAKYLGDPNSQDSV--GTAADAAMPPVCSIATGATVDWHWAGDSGPRNGEFR 67
D TP +A DP + S+ + A +C V + W G+S R+ FR
Sbjct: 424 DGTPNVLDKASMFIDPRDEVSIRDNSGRVALQVVICVAKLHVVVHFAWTGESNSRDFHFR 483
Query: 66 A 64
A
Sbjct: 484 A 484
>SB_48488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 370 LAKGWAPTFIGYSMQGLCKFGFYEVFKV 453
L KGW T ++M G K+G E+ K+
Sbjct: 123 LLKGWGATSFEHAMIGAAKYGHIEIVKL 150
>SB_23703| Best HMM Match : TTL (HMM E-Value=0)
Length = 657
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/57 (26%), Positives = 22/57 (38%)
Frame = +1
Query: 472 DDETAYTYRTFVSWRRLRRRNSSPTSPCRPWRRLRSVSKPCLVSRAPSARRGRRWSR 642
D+E T+ W + + CRPW+RL K ++R R R R
Sbjct: 29 DEEAVDPDATWSLWWKSSGFRTGEYEDCRPWQRLNHFPKTSAITRKDCLARNLRRMR 85
>SB_51790| Best HMM Match : TTL (HMM E-Value=0)
Length = 536
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/57 (26%), Positives = 22/57 (38%)
Frame = +1
Query: 472 DDETAYTYRTFVSWRRLRRRNSSPTSPCRPWRRLRSVSKPCLVSRAPSARRGRRWSR 642
D+E T+ W + + CRPW+RL K ++R R R R
Sbjct: 29 DEEAVDPDATWSLWWKSSGFRTGEYEDCRPWQRLNHFPKTSAITRKDCLARNLRRMR 85
>SB_10272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +1
Query: 52 VARCGAELSVPWPTIARPVPVDGRARGYRADRWHGGVCCGTHGVL 186
+ RCG + W +P P++GR R W G C +L
Sbjct: 338 IRRCGTH-APGWMVGRQPSPIEGRVRRTVCFNWAGNCCKWRQNIL 381
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = +1
Query: 232 CSVMRSDPTAVVPLDLVKCRLQV-----DAEKYKNVVNGFKVSVREEGVRGLAKGWAPTF 396
C + AV PLD++K RLQ+ Y +++ K EG+ KG P
Sbjct: 213 CLAGMTASVAVNPLDVIKTRLQLLNRPQGEPNYNGIIDCAKKIYSNEGLAAFYKGAVPRM 272
Query: 397 I 399
I
Sbjct: 273 I 273
>SB_51941| Best HMM Match : fn3 (HMM E-Value=2.1e-11)
Length = 155
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 289 RLQVDA-EKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYEV 444
R + DA +K GF ++ +EEG L K T + GL KF +YEV
Sbjct: 78 RTKPDATDKIYGEFQGFNITYKEEGGGTLYKTTNHTTRSCIITGLKKFTYYEV 130
>SB_5593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 27.9 bits (59), Expect = 9.9
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
Frame = +1
Query: 217 LRSWWCSVMRSDPTAVVPLDLVKCRLQVDAEK---YKNVVNGFKVSVREEGVR--GLAKG 381
+R WW ++ S P + VKC L EK + + G +++ EG + G A G
Sbjct: 582 VRQWWDTLQSSGPDLGYFPNAVKCWLVTKPEKEESARKIFEGTGINITTEGRKHLGAALG 641
Query: 382 WAPTFIGYSMQGLCKFGFYEVFKVAYAGMLDDETAYTYRTF 504
P Y + ++ +V K+A + + +Y TF
Sbjct: 642 SRPHLEQYVDSKVDEW-VGQVTKLALFAVSQPQASYAAYTF 681
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,085,547
Number of Sequences: 59808
Number of extensions: 573381
Number of successful extensions: 1796
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1793
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -