Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021859
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    33   0.003
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    33   0.003
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.46 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   7.4  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   9.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
 Frame = +1

Query: 256 TAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSM 411
           T V P++ VK  LQV        + ++YK +++ F    +E+G     +G     I Y  
Sbjct: 26  TTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFP 85

Query: 412 QGLCKFGFYEVFKVAYAGMLDDETAYTYRTFV 507
                F F + +K  + G +D  T +  R FV
Sbjct: 86  TQALNFAFKDKYKQVFLGGVDKNTQF-LRYFV 116


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
 Frame = +1

Query: 256 TAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSM 411
           T V P++ VK  LQV        + ++YK +++ F    +E+G     +G     I Y  
Sbjct: 26  TTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFP 85

Query: 412 QGLCKFGFYEVFKVAYAGMLDDETAYTYRTFV 507
                F F + +K  + G +D  T +  R FV
Sbjct: 86  TQALNFAFKDKYKQVFLGGVDKNTQF-LRYFV 116


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 282 HQVEGHHGRGVRPHDRTPPTPQRAKYLGDP 193
           HQ + H+G  V+   +T    Q+++  GDP
Sbjct: 22  HQHQQHYGAAVQVPQQTQSVQQQSQQAGDP 51


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 653 RNFVLDHLRPRLAEGARETRHGLD 582
           R+  L+HLR  +AEG  + ++ LD
Sbjct: 431 RSEYLNHLRANVAEGRNQRKNVLD 454


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 697  PVHDDEVCLLRTHLELLYQYVVPSPVSNAP 786
            P H  ++ L  T    L   V P P  NAP
Sbjct: 1366 PPHSPQITLTATTTNSLTMKVRPHPTDNAP 1395


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 231 VFCHAV*PHGRGAPRPGEVSSP 296
           +FCH    H    P PGEV  P
Sbjct: 272 MFCHTGLGHYGHHPDPGEVDLP 293


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 90  GPRNGEFRAASSNEEN 43
           GPRNG+ +  SS  EN
Sbjct: 210 GPRNGKRKRKSSTIEN 225


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = -3

Query: 764 GTTYWYSSSRCVRSKQTSS--SCTGSVCPRAAPG 669
           G+  W     C+  +++    +     CPRA PG
Sbjct: 65  GSKIWQMERSCMCCQESGEREASVSLFCPRAKPG 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,167
Number of Sequences: 438
Number of extensions: 5185
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)