Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021858
         (801 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    52   5e-09

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 52.0 bits (119), Expect = 5e-09
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
 Frame = +1

Query: 514 QTGSGKTLAYILPAIVHI--NNQPPIRRGD--GPIALVLAPTRELAQQIQQVAADFGHTS 681
           QTGSGKT A++LP I ++  +  PP    +   P+ ++++PTRELA QI      F + S
Sbjct: 203 QTGSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNS 262

Query: 682 YVRNTCVFGG 711
            V+   ++GG
Sbjct: 263 TVKVAVIYGG 272



 Score = 43.2 bits (97), Expect = 2e-06
 Identities = 20/55 (36%), Positives = 32/55 (58%)
 Frame = +3

Query: 342 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
           EV V+G +   PI  FE +    ++ + VK  GY +PT IQ    P+ +SG++L+
Sbjct: 145 EVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLM 199



 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 764 IATPGRLIDFL 796
           +ATPGRL DF+
Sbjct: 290 VATPGRLKDFV 300


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,480
Number of Sequences: 336
Number of extensions: 4129
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)