Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021858
(801 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 103 2e-23
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 77 2e-15
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 64 3e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 54 2e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 50 4e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 50 4e-07
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 49 7e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 47 3e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 46 6e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 46 6e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 46 8e-06
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 46 8e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 44 3e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 43 6e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 40 3e-04
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 40 3e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 3e-04
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 40 3e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 39 7e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 37 0.003
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 35 0.012
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.027
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 33 0.062
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.11
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.11
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 27 4.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 5.4
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 26 7.2
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 25 9.5
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 9.5
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 9.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 103 bits (248), Expect = 2e-23
Identities = 48/68 (70%), Positives = 54/68 (79%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 696
TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ FG +S +RNT
Sbjct: 168 TGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNT 227
Query: 697 CVFGGAPK 720
CV+GG P+
Sbjct: 228 CVYGGVPR 235
Score = 102 bits (245), Expect = 5e-23
Identities = 45/86 (52%), Positives = 58/86 (67%)
Frame = +3
Query: 258 PFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTM 437
PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + VK +
Sbjct: 81 PFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQL 140
Query: 438 GYKEPTPIQAQGWPIAMSGKNLVGYS 515
G++ PTPIQ Q WP+AMSG+++VG S
Sbjct: 141 GFEAPTPIQQQAWPMAMSGRDMVGIS 166
Score = 31.1 bits (67), Expect = 0.19
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 728 QARDLEKGSRNSIATPGRLIDFLE 799
Q RDL +G IATPGRL+D L+
Sbjct: 238 QIRDLIRGVEICIATPGRLLDMLD 261
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 77.4 bits (182), Expect = 2e-15
Identities = 36/79 (45%), Positives = 50/79 (63%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI + F +R
Sbjct: 463 KTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRA 522
Query: 694 TCVFGGAPKKRASPGLGEG 750
C +GGAP K L G
Sbjct: 523 CCAYGGAPIKDQIADLKRG 541
Score = 51.2 bits (117), Expect = 2e-07
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 431
+ F K+FY + SP EV+E R + + + + G++ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 432 TMGYKEPTPIQAQGWPIAMSGKNLVG 509
++GY++PT IQAQ P SG++++G
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVIG 460
Score = 29.5 bits (63), Expect = 0.58
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 722 REQARDLEKGSRNSIATPGRLIDFL 796
++Q DL++G+ + TPGR+ID L
Sbjct: 532 KDQIADLKRGAEIVVCTPGRMIDVL 556
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 63.7 bits (148), Expect = 3e-11
Identities = 36/82 (43%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTSY 684
+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ F
Sbjct: 294 ETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLG 353
Query: 685 VRNTCVFGGAPKKRASPGLGEG 750
R V GG + S + +G
Sbjct: 354 FRCVSVVGGHAFEEQSFQMSQG 375
Score = 48.0 bits (109), Expect = 2e-06
Identities = 18/60 (30%), Positives = 38/60 (63%)
Frame = +3
Query: 330 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 725 EQARDLEKGSRNSIATPGRLIDFLE 799
EQ+ + +G+ +ATPGRL+D LE
Sbjct: 367 EQSFQMSQGAHIVVATPGRLLDCLE 391
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 54.0 bits (124), Expect = 2e-08
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQIQQVAADFGH---T 678
QTGSGKTLAY+LP + + P R G A+++APTREL QQI VA + +
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLS 245
Query: 679 SYVRNTCVFGGAPKKRASPGLGEG 750
++ + V GG KK + +G
Sbjct: 246 HWIVSCNVIGGEKKKSEKARIRKG 269
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +2
Query: 719 KREQARDLEKGSRNSIATPGRLIDFLE 799
K E+AR + KG I TPGRL D LE
Sbjct: 260 KSEKAR-IRKGVNILIGTPGRLADHLE 285
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 50.0 bits (114), Expect = 4e-07
Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 690
QTGSGKT A+ LP I + NN P A+VLAPTRELA QI + G + VR
Sbjct: 91 QTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGVR 144
Query: 691 NTCVFGG 711
+ + GG
Sbjct: 145 SVVIVGG 151
Score = 34.3 bits (75), Expect = 0.020
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
F+E D + + + +G+K PTPIQ + P+ ++ ++++G
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIG 88
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 50.0 bits (114), Expect = 4e-07
Identities = 31/80 (38%), Positives = 41/80 (51%)
Frame = +1
Query: 508 GTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 687
G +TGSGKT A+ LP I + P G AL+L PTRELA QI + A G +
Sbjct: 50 GAKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALGANLNL 104
Query: 688 RNTCVFGGAPKKRASPGLGE 747
++ + GG R S L +
Sbjct: 105 KHALIVGGMDMIRQSIDLSK 124
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 49.2 bits (112), Expect = 7e-07
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+TGSGKT A+++P I H+ + AL+L+P RELA Q +V DF + +R+
Sbjct: 114 RTGSGKTAAFVIPMIEHLKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRS 170
Query: 694 TCVFGG 711
+ GG
Sbjct: 171 VAIVGG 176
Score = 31.1 bits (67), Expect = 0.19
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
F+ + + + G+K PTPIQ + P+ + G+++VG
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVG 111
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 47.2 bits (107), Expect = 3e-06
Identities = 26/69 (37%), Positives = 41/69 (59%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q + + ++
Sbjct: 210 ETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSLIQGTNLKA 267
Query: 694 TCVFGGAPK 720
V+GGAPK
Sbjct: 268 VVVYGGAPK 276
Score = 45.6 bits (103), Expect = 8e-06
Identities = 20/45 (44%), Positives = 31/45 (68%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
PI F+E + +++G+K YKEPTPIQA WP ++G+++VG
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVG 207
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 46.0 bits (104), Expect = 6e-06
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 657
+TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 59 RTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 33.5 bits (73), Expect = 0.036
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 357 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLV 55
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 46.0 bits (104), Expect = 6e-06
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 666
TGSGKTLAY+LP + + G G AL++APTRELA QI V +
Sbjct: 47 TGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Score = 34.3 bits (75), Expect = 0.020
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
F+ N +++ V G+K+ TP+QA P+ + K+LV
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 45.6 bits (103), Expect = 8e-06
Identities = 26/79 (32%), Positives = 41/79 (51%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+TG+GKTLA++L A + P +++L+PTRELA QI + A + + +R
Sbjct: 84 KTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRV 143
Query: 694 TCVFGGAPKKRASPGLGEG 750
+ GG K R + G
Sbjct: 144 SYAIGGNSKMREENAIRRG 162
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 45.6 bits (103), Expect = 8e-06
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Frame = +1
Query: 514 QTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQ 654
QTGSGKT ++ P + + + P P+ + G P L+LAPTREL QI +
Sbjct: 214 QTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHE 273
Query: 655 VAADFGHTSYVRNTCVFGGA 714
+ F + S+VR V+GGA
Sbjct: 274 ESRKFCYRSWVRPCAVYGGA 293
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +3
Query: 345 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLM 210
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 722 REQARDLEKGSRNSIATPGRLIDFLE 799
R Q R +++G ATPGRL+D ++
Sbjct: 296 RAQIRQIDQGCDLLSATPGRLVDLID 321
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 44.0 bits (99), Expect = 3e-05
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 687
+TGSGKTLA+++P I ++ P R G G I +++PTRELA QI VA + +
Sbjct: 134 KTGSGKTLAFLIPTIEMLYALKFKP-RNGTGVI--IISPTRELALQIFGVAKELLKYHHQ 190
Query: 688 RNTCVFGGAPKKRASPGLGEG 750
V GGA ++ + L +G
Sbjct: 191 TFGIVIGGANRRAEADKLVKG 211
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 719 KREQARDLEKGSRNSIATPGRLIDFLE 799
+R +A L KG +ATPGRL+D L+
Sbjct: 201 RRAEADKLVKGVNLLVATPGRLLDHLQ 227
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 42.7 bits (96), Expect = 6e-05
Identities = 26/66 (39%), Positives = 36/66 (54%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 84 KTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRLHSFSA 142
Query: 694 TCVFGG 711
+ GG
Sbjct: 143 GLIIGG 148
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 40.3 bits (90), Expect = 3e-04
Identities = 24/69 (34%), Positives = 34/69 (49%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 696
TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA + +
Sbjct: 305 TGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVC 362
Query: 697 CVFGGAPKK 723
GG K
Sbjct: 363 LCIGGLSLK 371
Score = 35.1 bits (77), Expect = 0.012
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVG 301
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 698 VCLVVLLKREQARDLEKGSRNSIATPGRLIDFL 796
+C+ L + Q ++L K IATPGR ID +
Sbjct: 363 LCIGGLSLKLQEQELRKRPDIVIATPGRFIDHM 395
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 40.3 bits (90), Expect = 3e-04
Identities = 25/66 (37%), Positives = 36/66 (54%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
Q+G+GKT + + + I+ +++ AL+LAPTRELAQQIQ+V G V
Sbjct: 64 QSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNVEC 118
Query: 694 TCVFGG 711
GG
Sbjct: 119 HACIGG 124
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 660
TGSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 40.3 bits (90), Expect = 3e-04
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +1
Query: 511 TQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 690
+Q+G+GKT A+ L + ++ P P A+ LAP+RELA+QI V + G + V+
Sbjct: 160 SQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 39.1 bits (87), Expect = 7e-04
Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQ 654
TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q
Sbjct: 168 TGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQ 210
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 37.1 bits (82), Expect = 0.003
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+ G+GKT A+++P++ ++ + + L+L PTRELA Q QV G V+
Sbjct: 89 KNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQVCKTLGKHMNVKV 143
Query: 694 TCVFGG 711
GG
Sbjct: 144 MVTTGG 149
Score = 33.1 bits (72), Expect = 0.047
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + G+ G++ P+PIQ + PIA+SG++++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDIL 85
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 35.1 bits (77), Expect = 0.012
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSYVR 690
Q+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G H +
Sbjct: 66 QSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDHMNVQC 120
Query: 691 NTCVFG 708
+ C+ G
Sbjct: 121 HACIGG 126
Score = 33.1 bits (72), Expect = 0.047
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +3
Query: 321 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 500
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 501 LV 506
++
Sbjct: 61 VI 62
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.027
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 648
TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 32.7 bits (71), Expect = 0.062
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVAADFG-HTSYV 687
++G GKT ++L + I P+ DG ++ LVL TRELA QI+ A F + V
Sbjct: 96 KSGMGKTAVFVLSTLQQIE---PV---DGEVSVLVLCHTRELAFQIKNEYARFSKYLPDV 149
Query: 688 RNTCVFGG 711
R +GG
Sbjct: 150 RTAVFYGG 157
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 648
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Frame = +3
Query: 510 YSNGFRQNVGLHLASHC-------AHKQPTAYSER*WSDCFGLGAYQRVSTTNSASCCRF 668
Y GF + G + HC H++ AY E F Y R++T + C R
Sbjct: 30 YLLGFSCSTGEKIFEHCYRDNINEKHREAAAYGEAIRQVAFSKD-YSRMATVSEDKCLRL 88
Query: 669 W 671
W
Sbjct: 89 W 89
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 220 NMRRPDW-DSVSLNLSTKTFMIHILQFSKDHHMKSKSTEII 339
+++ P W +++LNL +K+ + + +SKD K ++
Sbjct: 1152 SLKTPSWLPNLTLNLESKSTTLRTIYYSKDFDEKGNQITVL 1192
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 249 FTQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 383
FT+ FYDP P LK + +E+ + + V +H P+Q
Sbjct: 118 FTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 9.5
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +3
Query: 474 WPIAMSGKNLVGYSNGFRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSA 653
WP+ + +N +G + A AHKQ ER + L ++Q + S
Sbjct: 159 WPLKETFENKLGVQLSYLDGD----AGIIAHKQTQETHERIRNWLSSLNSWQLAAFERSV 214
Query: 654 SCCR 665
SCC+
Sbjct: 215 SCCK 218
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 642
TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 543 TGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 438 PLSLHLVAHNQENL--LLQSIE 379
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,174
Number of Sequences: 5004
Number of extensions: 66375
Number of successful extensions: 231
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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