Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021858
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       55   7e-10

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 55.2 bits (127), Expect = 7e-10
 Identities = 25/58 (43%), Positives = 36/58 (62%)
 Frame = +3

Query: 333 NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
           +N +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++L+
Sbjct: 180 DNIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLM 237



 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +1

Query: 514 QTGSGKTLAYILPAIVHINNQPP----IRRGDGPIALVLAPTRELAQQIQQVAADFGHTS 681
           QTGSGKT A+ +P I  +  +            P  ++++PTREL  QI Q    F   S
Sbjct: 241 QTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNS 300

Query: 682 YVRNTCVFGG 711
            ++    +GG
Sbjct: 301 ILKTVVAYGG 310



 Score = 27.5 bits (58), Expect = 0.15
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 728 QARDLEKGSRNSIATPGRLIDFLE 799
           Q   L  G    +ATPGRL+DF+E
Sbjct: 316 QRGKLSAGCHILVATPGRLLDFVE 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,140
Number of Sequences: 438
Number of extensions: 4484
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)