Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021858
(801 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 105 3e-23
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 100 2e-21
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 100 2e-21
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 78 8e-15
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 75 7e-14
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 75 7e-14
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 75 7e-14
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 75 7e-14
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 75 7e-14
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 74 1e-13
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 70 2e-12
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 67 1e-11
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 63 2e-10
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 61 1e-09
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 56 3e-08
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 56 4e-08
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 56 4e-08
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 54 8e-08
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 53 2e-07
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 53 2e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 53 3e-07
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 51 8e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 50 1e-06
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 49 3e-06
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 48 1e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 48 1e-05
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 48 1e-05
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 45 5e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 45 5e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 44 9e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 44 2e-04
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 44 2e-04
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 43 2e-04
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 43 2e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 43 3e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 42 4e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 42 4e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 42 5e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 42 6e-04
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 42 6e-04
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 40 0.001
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 40 0.002
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 40 0.003
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 40 0.003
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 39 0.003
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 38 0.008
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 38 0.008
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 37 0.014
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 37 0.014
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 36 0.031
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 36 0.041
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 35 0.055
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 34 0.096
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 33 0.17
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 33 0.17
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 33 0.22
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 33 0.22
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 33 0.22
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 30 1.6
At5g48950.2 68418.m06055 thioesterase family protein contains Pf... 29 2.7
At4g10650.1 68417.m01739 GTP-binding family protein contains Pfa... 29 3.6
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 29 3.6
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 29 4.7
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 29 4.7
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 29 4.7
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 6.3
At2g33420.1 68415.m04096 expressed protein 28 6.3
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 8.3
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 105 bits (253), Expect = 3e-23
Identities = 46/69 (66%), Positives = 57/69 (82%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG +S ++
Sbjct: 144 ETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKT 203
Query: 694 TCVFGGAPK 720
TC++GG PK
Sbjct: 204 TCIYGGVPK 212
Score = 102 bits (245), Expect = 2e-22
Identities = 43/84 (51%), Positives = 57/84 (67%)
Frame = +3
Query: 258 PFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTM 437
PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV + VK
Sbjct: 58 PFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKA 117
Query: 438 GYKEPTPIQAQGWPIAMSGKNLVG 509
G+ EPTPIQ+QGWP+AM G++L+G
Sbjct: 118 GFTEPTPIQSQGWPMAMKGRDLIG 141
Score = 36.3 bits (80), Expect = 0.024
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +2
Query: 719 KREQARDLEKGSRNSIATPGRLIDFLE 799
K Q RDL+KG IATPGRLID +E
Sbjct: 212 KGPQVRDLQKGVEIVIATPGRLIDMME 238
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 99.5 bits (237), Expect = 2e-21
Identities = 44/69 (63%), Positives = 57/69 (82%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269
Query: 694 TCVFGGAPK 720
TC++GGAPK
Sbjct: 270 TCIYGGAPK 278
Score = 94.3 bits (224), Expect = 8e-20
Identities = 39/93 (41%), Positives = 60/93 (64%)
Frame = +3
Query: 231 PRLGFCFTQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 410
P+ F F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 411 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
+ + + +G+ EPTPIQAQGWP+A+ G++L+G
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIG 207
Score = 34.7 bits (76), Expect = 0.072
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = +2
Query: 719 KREQARDLEKGSRNSIATPGRLIDFLE 799
K Q RDL +G IATPGRLID LE
Sbjct: 278 KGPQIRDLRRGVEIVIATPGRLIDMLE 304
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 99.5 bits (237), Expect = 2e-21
Identities = 44/69 (63%), Positives = 57/69 (82%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+
Sbjct: 210 ETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRS 269
Query: 694 TCVFGGAPK 720
TC++GGAPK
Sbjct: 270 TCIYGGAPK 278
Score = 94.3 bits (224), Expect = 8e-20
Identities = 39/93 (41%), Positives = 60/93 (64%)
Frame = +3
Query: 231 PRLGFCFTQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 410
P+ F F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 411 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
+ + + +G+ EPTPIQAQGWP+A+ G++L+G
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIG 207
Score = 34.7 bits (76), Expect = 0.072
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = +2
Query: 719 KREQARDLEKGSRNSIATPGRLIDFLE 799
K Q RDL +G IATPGRLID LE
Sbjct: 278 KGPQIRDLRRGVEIVIATPGRLIDMLE 304
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 77.8 bits (183), Expect = 8e-15
Identities = 35/67 (52%), Positives = 45/67 (67%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +R
Sbjct: 574 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRC 633
Query: 694 TCVFGGA 714
V+GG+
Sbjct: 634 VPVYGGS 640
Score = 66.1 bits (154), Expect = 3e-11
Identities = 29/85 (34%), Positives = 47/85 (55%)
Frame = +3
Query: 255 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 434
+PF KNFY + + + EV YR E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 435 MGYKEPTPIQAQGWPIAMSGKNLVG 509
+ Y++P PIQ Q PI MSG++ +G
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCIG 571
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 74.5 bits (175), Expect = 7e-14
Identities = 34/67 (50%), Positives = 44/67 (65%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+TGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +
Sbjct: 441 KTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIIC 500
Query: 694 TCVFGGA 714
V+GG+
Sbjct: 501 VPVYGGS 507
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/85 (35%), Positives = 47/85 (55%)
Frame = +3
Query: 255 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 434
+PF KNFY + + + V YR E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 435 MGYKEPTPIQAQGWPIAMSGKNLVG 509
+ Y++P PIQAQ PI MSG++ +G
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCIG 438
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 74.5 bits (175), Expect = 7e-14
Identities = 36/69 (52%), Positives = 47/69 (68%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 694 TCVFGGAPK 720
TC++GGAPK
Sbjct: 262 TCLYGGAPK 270
Score = 72.1 bits (169), Expect = 4e-13
Identities = 33/75 (44%), Positives = 44/75 (58%)
Frame = +3
Query: 282 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 461
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 462 QAQGWPIAMSGKNLV 506
QAQ WPIAM G+++V
Sbjct: 185 QAQSWPIAMQGRDIV 199
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 719 KREQARDLEKGSRNSIATPGRLIDFLE 799
K Q RDLE+G+ +ATPGRL D LE
Sbjct: 270 KGPQLRDLERGADIVVATPGRLNDILE 296
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 74.5 bits (175), Expect = 7e-14
Identities = 36/69 (52%), Positives = 47/69 (68%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 694 TCVFGGAPK 720
TC++GGAPK
Sbjct: 262 TCLYGGAPK 270
Score = 72.1 bits (169), Expect = 4e-13
Identities = 33/75 (44%), Positives = 44/75 (58%)
Frame = +3
Query: 282 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 461
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 462 QAQGWPIAMSGKNLV 506
QAQ WPIAM G+++V
Sbjct: 185 QAQSWPIAMQGRDIV 199
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 719 KREQARDLEKGSRNSIATPGRLIDFLE 799
K Q RDLE+G+ +ATPGRL D LE
Sbjct: 270 KGPQLRDLERGADIVVATPGRLNDILE 296
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 74.5 bits (175), Expect = 7e-14
Identities = 36/69 (52%), Positives = 47/69 (68%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S +
Sbjct: 203 KTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISC 261
Query: 694 TCVFGGAPK 720
TC++GGAPK
Sbjct: 262 TCLYGGAPK 270
Score = 72.1 bits (169), Expect = 4e-13
Identities = 33/75 (44%), Positives = 44/75 (58%)
Frame = +3
Query: 282 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 461
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 462 QAQGWPIAMSGKNLV 506
QAQ WPIAM G+++V
Sbjct: 185 QAQSWPIAMQGRDIV 199
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 719 KREQARDLEKGSRNSIATPGRLIDFLE 799
K Q RDLE+G+ +ATPGRL D LE
Sbjct: 270 KGPQLRDLERGADIVVATPGRLNDILE 296
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 74.5 bits (175), Expect = 7e-14
Identities = 29/85 (34%), Positives = 50/85 (58%)
Frame = +3
Query: 255 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 434
+P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 435 MGYKEPTPIQAQGWPIAMSGKNLVG 509
Y++PT IQ Q PI +SG++++G
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVIG 270
Score = 74.1 bits (174), Expect = 1e-13
Identities = 35/69 (50%), Positives = 47/69 (68%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+TGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F +R
Sbjct: 273 KTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRV 332
Query: 694 TCVFGGAPK 720
+ V+GG K
Sbjct: 333 SAVYGGMSK 341
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 719 KREQARDLEKGSRNSIATPGRLIDFLE 799
K EQ ++L+ G +ATPGRLID L+
Sbjct: 341 KHEQFKELKAGCEIVVATPGRLIDMLK 367
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 74.1 bits (174), Expect = 1e-13
Identities = 36/69 (52%), Positives = 48/69 (69%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+TGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG +S +
Sbjct: 480 KTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRISC 538
Query: 694 TCVFGGAPK 720
TC++GGAPK
Sbjct: 539 TCLYGGAPK 547
Score = 64.5 bits (150), Expect = 8e-11
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Frame = +3
Query: 264 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 431
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 432 TMGYKEPTPIQAQGWPIAMSGKNLV 506
+ G+ PTPIQAQ WPIA+ +++V
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIV 476
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 719 KREQARDLEKGSRNSIATPGRLIDFLE 799
K Q ++LE+G+ +ATPGRL D LE
Sbjct: 547 KGPQLKELERGADIVVATPGRLNDILE 573
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 70.1 bits (164), Expect = 2e-12
Identities = 35/69 (50%), Positives = 45/69 (65%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+TGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG +S +
Sbjct: 274 KTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFGKSSKISC 332
Query: 694 TCVFGGAPK 720
C++GGAPK
Sbjct: 333 ACLYGGAPK 341
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +3
Query: 426 VKTMGYKEPTPIQAQGWPIAMSGKNLV 506
V + G+ P+PIQAQ WPIAM +++V
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIV 270
Score = 31.1 bits (67), Expect = 0.89
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 321 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 410
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 719 KREQARDLEKGSRNSIATPGRLIDFLE 799
K Q +++E+G +ATPGRL D LE
Sbjct: 341 KGPQLKEIERGVDIVVATPGRLNDILE 367
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGHTSY 684
+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 358 ETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLG 417
Query: 685 VRNTCVFGG 711
R T + GG
Sbjct: 418 FRVTSIVGG 426
Score = 42.3 bits (95), Expect = 4e-04
Identities = 15/61 (24%), Positives = 35/61 (57%)
Frame = +3
Query: 327 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 507 G 509
G
Sbjct: 355 G 355
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 725 EQARDLEKGSRNSIATPGRLIDFLE 799
EQ + +G IATPGRLID LE
Sbjct: 431 EQGLKITQGCEIVIATPGRLIDCLE 455
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/90 (32%), Positives = 52/90 (57%)
Frame = +3
Query: 240 GFCFTQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 419
G +T+P + ++ P V K S +++ R +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 420 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
+ +K G PTPIQ QG P+ +SG++++G
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMIG 139
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 669
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q V F
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQF 196
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 60.9 bits (141), Expect = 1e-09
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTS 681
+TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V + G
Sbjct: 159 KTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPC 218
Query: 682 YVRNTCVFGGAPK 720
+++ CV+GG+ K
Sbjct: 219 GLKSICVYGGSSK 231
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = +3
Query: 315 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 488
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 489 SGKNLVG 509
G++L+G
Sbjct: 150 DGRDLIG 156
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 56.0 bits (129), Expect = 3e-08
Identities = 27/90 (30%), Positives = 49/90 (54%)
Frame = +3
Query: 240 GFCFTQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 419
G +T+P + P + K S + + R + V+G ++ PI+ F++ FP V
Sbjct: 100 GITYTEPLLTG-WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVL 158
Query: 420 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
+K G +PTPIQ QG P+ ++G++++G
Sbjct: 159 DTLKEKGIVQPTPIQVQGLPVILAGRDMIG 188
Score = 51.6 bits (118), Expect = 6e-07
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQQVAADF 669
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q +V F
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQF 245
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 55.6 bits (128), Expect = 4e-08
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Frame = +1
Query: 505 LGTQTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADF 669
LG+ TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA
Sbjct: 154 LGSHTGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSI 212
Query: 670 GHTSYVRNTCVFGGA 714
H + R+ V GG+
Sbjct: 213 SHHARFRSILVSGGS 227
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 55.6 bits (128), Expect = 4e-08
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 678
QTGSGKT A+ P I I ++R G P+A++L+PTRELA QI A F +
Sbjct: 204 QTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQ 263
Query: 679 SYVRNTCVFGGAP 717
+ V+ +GG P
Sbjct: 264 TGVKVVVAYGGTP 276
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 PFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 434
PF + +P P ++ + + + + SG V P+ F E + + + ++
Sbjct: 117 PFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRR 176
Query: 435 MGYKEPTPIQAQGWPIAMSGKNLV 506
Y +PTP+Q PI + G++L+
Sbjct: 177 CKYVKPTPVQRHAIPILLEGRDLM 200
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 725 EQARDLEKGSRNSIATPGRLIDFLE 799
+Q R+LE+G +ATPGRL D LE
Sbjct: 279 QQLRELERGVDILVATPGRLNDLLE 303
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 54.4 bits (125), Expect = 8e-08
Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 678
QTGSGKT A+ P I I I R G P+A++L+PTRELA QI A F +
Sbjct: 191 QTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQ 250
Query: 679 SYVRNTCVFGGAP 717
+ V+ +GG P
Sbjct: 251 TGVKVVVAYGGTP 263
Score = 37.9 bits (84), Expect = 0.008
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +3
Query: 252 TQPF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 428
T PF N DP + + E Y + + SG V P+ F E + + + +
Sbjct: 103 TNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNI 161
Query: 429 KTMGYKEPTPIQAQGWPIAMSGKNLV 506
+ Y +PTP+Q PI +G++L+
Sbjct: 162 QRCKYVKPTPVQRNAIPILAAGRDLM 187
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 725 EQARDLEKGSRNSIATPGRLIDFLE 799
+Q R+LE+G +ATPGRL D LE
Sbjct: 266 QQIRELERGVDILVATPGRLNDLLE 290
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 678
QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ 255
Query: 679 SYVRNTCVFGGAP 717
+ V+ +GG P
Sbjct: 256 TGVKVVVAYGGTP 268
Score = 34.7 bits (76), Expect = 0.072
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 345 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLM 192
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 725 EQARDLEKGSRNSIATPGRLIDFLE 799
+Q R+LE+G +ATPGRL D LE
Sbjct: 271 QQLRELERGCDILVATPGRLNDLLE 295
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHT 678
QTGSGKT A+ P I I + R G P A++L+PTRELA QI A F +
Sbjct: 196 QTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQ 255
Query: 679 SYVRNTCVFGGAP 717
+ V+ +GG P
Sbjct: 256 TGVKVVVAYGGTP 268
Score = 34.7 bits (76), Expect = 0.072
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 345 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLM 192
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +2
Query: 725 EQARDLEKGSRNSIATPGRLIDFLE 799
+Q R+LE+G +ATPGRL D LE
Sbjct: 271 QQLRELERGCDILVATPGRLNDLLE 295
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 52.8 bits (121), Expect = 3e-07
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SYVR 690
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H ++
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIV 135
Query: 691 NTCVFGGAPKKRASPGLGEG 750
V GG K + L +G
Sbjct: 136 PGYVMGGEKKAKEKARLRKG 155
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 435 MGYKEPTPIQAQGWPIAMSGKN-LVGYSNGFRQNVGLHLASHCAHKQ 572
MG++ PT +QAQ P+ +SG++ LV G + + +LA H Q
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIA-YLAPLIHHLQ 93
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +2
Query: 722 REQARDLEKGSRNSIATPGRLIDFLE 799
+E+AR L KG IATPGRL+D L+
Sbjct: 147 KEKAR-LRKGISILIATPGRLLDHLK 171
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 51.2 bits (117), Expect = 8e-07
Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 690
+TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++ +F ++
Sbjct: 149 RTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK---EFRESAPSL 205
Query: 691 NT-CVFGGAP 717
+T C++GG P
Sbjct: 206 DTICLYGGTP 215
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADFGHT 678
+TG GKTLA++LP + + N P + G P LVL PTRELA+Q+ +G +
Sbjct: 141 RTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGS 200
Query: 679 SYVRNTCVFGG 711
+ + C++GG
Sbjct: 201 LGLSSCCLYGG 211
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 49.2 bits (112), Expect = 3e-06
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 690
+TG+GKTLA+ +P I I RG P LVLAPTRELA+Q+++ +F ++
Sbjct: 161 RTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK---EFRESAPSL 217
Query: 691 NT-CVFGGAP 717
+T C++GG P
Sbjct: 218 DTICLYGGTP 227
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 47.6 bits (108), Expect = 1e-05
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQVAADFGHT 678
+TG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++ +
Sbjct: 147 KTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--SA 204
Query: 679 SYVRNTCVFGG 711
Y+ CV+GG
Sbjct: 205 PYLSTVCVYGG 215
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 687
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 156 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPF 215
Query: 688 RNTCVFGGAP 717
+ V GG P
Sbjct: 216 KTALVVGGDP 225
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 306 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 479
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 480 IAMSGKNLV 506
A++GK+L+
Sbjct: 143 AALTGKSLL 151
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 687
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G
Sbjct: 19 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPF 78
Query: 688 RNTCVFGGAP 717
+ V GG P
Sbjct: 79 KTALVVGGDP 88
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/66 (36%), Positives = 41/66 (62%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +R
Sbjct: 73 RTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLRV 129
Query: 694 TCVFGG 711
+ + GG
Sbjct: 130 SLLVGG 135
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE N V +K GYK PTPIQ + P+ +SG ++V
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVV 69
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 45.2 bits (102), Expect = 5e-05
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 684
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPN 119
Query: 685 VRNTCVFGG 711
V + + GG
Sbjct: 120 VNSVLLVGG 128
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 44.4 bits (100), Expect = 9e-05
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 645
+TG+GKT+A++LPAI + PP R I LV+ PTRELA Q
Sbjct: 427 KTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +3
Query: 348 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNL 503
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDL 207
Score = 42.3 bits (95), Expect = 4e-04
Identities = 28/79 (35%), Positives = 40/79 (50%)
Frame = +1
Query: 475 GR*LCLERI*LGTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQ 654
GR LC I TGSGKT A+ LP + + +P +R L+L PTRELA QI
Sbjct: 204 GRDLCASAI-----TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHS 256
Query: 655 VAADFGHTSYVRNTCVFGG 711
+ + + ++ + GG
Sbjct: 257 MIQNLAQFTDIKCGLIVGG 275
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/66 (42%), Positives = 37/66 (56%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
QTGSGKT A+ LP I+H + P G ALV+ PTRELA Q+ + G +R
Sbjct: 103 QTGSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLRC 157
Query: 694 TCVFGG 711
+ + GG
Sbjct: 158 SVIVGG 163
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
FE ++ + K +G ++PTP+Q P ++G++++G
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLG 100
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +1
Query: 514 QTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 690
+TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 134 RTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEELLKHHSQT 191
Query: 691 NTCVFGGAPKKRASPGLGEG 750
+ V GG ++ + + G
Sbjct: 192 VSMVIGGNNRRSEAQRIASG 211
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 719 KREQARDLEKGSRNSIATPGRLIDFLE 799
+R +A+ + GS IATPGRL+D L+
Sbjct: 201 RRSEAQRIASGSNLVIATPGRLLDHLQ 227
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +3
Query: 330 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 497
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 645
TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 187 TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 648
+TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 91 KTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 34.7 bits (76), Expect = 0.072
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +3
Query: 315 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 494
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 495 KNLV 506
K++V
Sbjct: 84 KDVV 87
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 42.3 bits (95), Expect = 4e-04
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF--GHTSYV 687
+TGSGKTLA+++PA V + + +G LV+ PTRELA Q VA + H+ V
Sbjct: 199 RTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTV 257
Query: 688 RNTCVFGGAPKKRASPGLGEG 750
V GG +K + L +G
Sbjct: 258 GK--VIGGEKRKTEAEILAKG 276
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/85 (24%), Positives = 37/85 (43%)
Frame = +3
Query: 255 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 434
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 435 MGYKEPTPIQAQGWPIAMSGKNLVG 509
MG+ T IQA+ P M G++++G
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLG 196
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 719 KREQARDLEKGSRNSIATPGRLIDFLE 799
++ +A L KG +ATPGRL+D LE
Sbjct: 266 RKTEAEILAKGVNLLVATPGRLLDHLE 292
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 660
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQ 645
+TG+GKT+A++LP+I + PP + PI ALV+ PTRELA Q
Sbjct: 99 KTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQ 645
+TG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 125 KTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 41.5 bits (93), Expect = 6e-04
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SY 684
TGSGKTLA+++P + + PP + + ++++PTREL+ QI VA F T +
Sbjct: 62 TGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVAQPFVSTLAN 119
Query: 685 VRNTCVFGGAPKK 723
V + + GG K
Sbjct: 120 VNSVLLVGGREVK 132
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 40.3 bits (90), Expect = 0.001
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQVAADFG 672
QTGSGKT A+ +P + + +++P R P A VL+PTRELA QI + G
Sbjct: 54 QTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALG 113
Query: 673 HTSYVRNTCVFGGAPKKRASPGLGE 747
+R + GG + + + LG+
Sbjct: 114 ADISLRCAVLVGGIDRMQQTIALGK 138
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +3
Query: 363 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 509
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIG 51
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Frame = +1
Query: 505 LGTQTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQIQQVAADFG 672
+ Q+GSGKTLAY++P I + Q + G P +VL PT ELA Q+
Sbjct: 416 IADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSIS 475
Query: 673 HTSY-VRNTCVFGGAPKKRASPGLGEG 750
+ R+ V GG ++ L +G
Sbjct: 476 KSGVPFRSMVVTGGFRQRTQLENLEQG 502
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +1
Query: 484 LCLERI*LGTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 645
LC I +TGSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 648
+TG+GK++A++LPAI + N+ + + AL+L PTRELA QI
Sbjct: 373 KTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +1
Query: 505 LGTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 657
+ + TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 67 VNSPTGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 37.9 bits (84), Expect = 0.008
Identities = 23/52 (44%), Positives = 29/52 (55%)
Frame = +1
Query: 505 LGTQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 660
L QTGSGKTL Y+L IN Q A+++ PTREL Q+ +VA
Sbjct: 118 LHAQTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQVTKVA 164
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI 648
+TG+GK++A++LPAI + N+ + + L+L PTRELA QI
Sbjct: 420 KTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+ G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G ++
Sbjct: 176 KNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKIQV 230
Query: 694 TCVFGGAPKK 723
GG K
Sbjct: 231 MVTTGGTSLK 240
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + G+ G++ P+PIQ + PIA++G++++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDIL 172
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+ G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G ++
Sbjct: 176 KNGTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKIQV 230
Query: 694 TCVFGGAPKK 723
GG K
Sbjct: 231 MVTTGGTSLK 240
Score = 31.9 bits (69), Expect = 0.51
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + G+ G++ P+PIQ + PIA++G++++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDIL 172
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 35.9 bits (79), Expect = 0.031
Identities = 20/35 (57%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +1
Query: 607 ALVLAPTRELAQQIQQVAADFGHTSYVR-NTCVFG 708
ALVLAPTRELAQQI++V G V+ + CV G
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGG 144
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 35.5 bits (78), Expect = 0.041
Identities = 19/35 (54%), Positives = 22/35 (62%)
Frame = +1
Query: 607 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGG 711
ALVLAPTRELAQQI++V G V+ GG
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGG 146
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 644 KFSKLLQILDTHLMFVTRVCLVVLLKREQARDLEKGSRNSIATPGRLIDFL 796
+ K+++ L +L + C+ RE R L+ G + TPGR+ D L
Sbjct: 124 QIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDLL 174
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 35.1 bits (77), Expect = 0.055
Identities = 20/35 (57%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +1
Query: 607 ALVLAPTRELAQQIQQVAADFGHTSYVR-NTCVFG 708
ALVLAPTRELAQQI++V G V+ + CV G
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGG 144
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 644 KFSKLLQILDTHLMFVTRVCLVVLLKREQARDLEKGSRNSIATPGRLIDFLE 799
+ K+++ L +L C+ RE R L+ G + TPGR+ D L+
Sbjct: 122 QIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLK 173
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 34.3 bits (75), Expect = 0.096
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +1
Query: 520 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 672
GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 141 GSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +3
Query: 375 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGYSNGFRQNVGLHLAS 554
PI+ F++ D V +GV GYK+P+ IQ + + G++++ + + S
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 555 HC 560
C
Sbjct: 80 VC 81
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = +1
Query: 514 QTGSGKT--LAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSY 684
Q+G+GKT +A + IV+I+++ LVL+P+RELA Q ++ G HT+
Sbjct: 67 QSGTGKTSMIAISVCQIVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHTNI 119
Query: 685 VRNTCVFG 708
+ C+ G
Sbjct: 120 QAHACIGG 127
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 33.5 bits (73), Expect = 0.17
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Frame = +1
Query: 517 TGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI-QQVAADF 669
TGSGKTLAY+LP + I R A+++AP+REL QI ++V
Sbjct: 156 TGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLL 215
Query: 670 GHTSYVRNTCVFGGAPKKRASPGL 741
G + GGA + R L
Sbjct: 216 GPVHRRMVQQLVGGANRMRQEEAL 239
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+ G+GKT A+ +P + I+ + + A++L PTRELA Q QV + ++
Sbjct: 169 KNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNIQV 223
Query: 694 TCVFGG 711
GG
Sbjct: 224 MVTTGG 229
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + +G+ G+++P+PIQ + PIA++G +++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDIL 165
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+ G+GKT A+ +P + I+ + + A++L PTRELA Q QV + ++
Sbjct: 169 KNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNIQV 223
Query: 694 TCVFGG 711
GG
Sbjct: 224 MVTTGG 229
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + +G+ G+++P+PIQ + PIA++G +++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDIL 165
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 693
+ G+GKT A+ +P + I+ + + + A++L PTRELA Q QV + +
Sbjct: 199 KNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYLKIEV 253
Query: 694 TCVFGG 711
GG
Sbjct: 254 MVTTGG 259
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 387 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 506
FE+ + +G+ G+++P+PIQ + PIA++G +++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDIL 195
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 607 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGA 714
AL+L+PTRELA Q ++ G H + + C+ G +
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNS 142
>At5g48950.2 68418.m06055 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein
Length = 127
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 507 GYSNGFRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSAS 656
G ++GF++ G+HL+ H H +P A E +++ F + + + T + S
Sbjct: 64 GIASGFKRVAGIHLSIH--HLRPAALGEIVFAESFPVSVGKNIQTEDLKS 111
>At4g10650.1 68417.m01739 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 332
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 740 SPGLALFLGAPPNTHVLRT*DVCPKSAATC*ICCANSLVG 621
S GL L +G+ PN +VL T + P + IC +L G
Sbjct: 131 SEGLVLQIGSHPNVYVLDTPGIFPPNLYDAEICAKLALTG 170
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALVLAPTRELAQQI 648
+TGSGKTLA+ LP + + + DG + AL++ PTRELA Q+
Sbjct: 236 ETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQV 295
Query: 649 QQVAADFGHTSYVRNTCVFGG 711
+ + V+ + GG
Sbjct: 296 TEHLENAAKNLSVKVVPIVGG 316
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 648
++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 91 KSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 648
++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 8 KSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 514 QTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 648
++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 91 KSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 647 ICCANSLVGAKTKAIGPSPLRI 582
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 9 SKRIHSLNKHLQLNPKI 59
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 9 SKRIHSLNKHLQLNPKI 59
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,490,122
Number of Sequences: 28952
Number of extensions: 353095
Number of successful extensions: 1198
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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