Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021857
         (831 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.2  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   3.9  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   6.9  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   6.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 97   NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEA 219
            N+I  + W +  D  G     AYHGD  +  E I    ++A
Sbjct: 911  NRIRNQRWIVNRDTSGATGPFAYHGDQWVGFEDIKSVRDKA 951



 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 642  QTKPTASTTRLYTTSASAL 698
            QTK T STT   TT+ S L
Sbjct: 1184 QTKTTTSTTTRPTTTVSQL 1202


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 642 QTKPTASTTRLYTTSASALSNC--PHPTYGDLNHLVSLTMS 758
           Q +   S+++   ++ ++ +NC   +P Y ++++L S TMS
Sbjct: 231 QHRSWCSSSQPVLSTTNSTTNCYNNYPYYSNMDYLSSSTMS 271


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 645 TKPTASTTRLYTTSASALSNCP 710
           +K + STT   TT++SAL++ P
Sbjct: 4   SKFSPSTTTTTTTTSSALNSTP 25


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 645 TKPTASTTRLYTTSASALSNCP 710
           +K + STT   TT++SAL++ P
Sbjct: 4   SKFSPSTTTTTTTTSSALNSTP 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,502
Number of Sequences: 336
Number of extensions: 4230
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)