Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021857
         (831 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   2.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   4.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   4.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.0  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   8.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   8.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   8.0  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 393 VDSVLDVVRKESESCDCLQG 452
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 344 AGLSEDEVVRTEDLSERSRADRVHGAGLQVTRMARG 237
           AGL+E+EVV  + ++E   ++        V R+  G
Sbjct: 62  AGLTEEEVVLAKTIAECPESENTVQKAALVLRLREG 97


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 638 FQLAGELRESHCM 600
           F   G +RESHCM
Sbjct: 68  FGCCGAIRESHCM 80


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 538 QNHEHILSSPLAQSIRHCRRTIQCDSLSSPAS*KHRRNLLHRQRG 672
           Q H+ +++SPL+Q  +   +     +L SP      R+   R+RG
Sbjct: 230 QQHQGVVTSPLSQQQQAAPQGAASANLPSPLY-PWMRSQFERKRG 273


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 15/57 (26%), Positives = 21/57 (36%)
 Frame = +2

Query: 404 PRCSPQRIRILRLPTGLPTYTFPRWRHRVRYGHPPISKIREEYPDRIMNTYSVVPSP 574
           P+  P   R+ R P   P    P +  + R  HP + +  E  P      Y   P P
Sbjct: 107 PQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRP 163


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 172 DSDLQLERINVYYNEASGGKYVPRAILVTWSP 267
           D+ L+   I  Y N+  GG++V   I   W+P
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFVRDLI---WTP 100


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +3

Query: 672 LYTTSASALSNCPHPTYGDLNHLVSLTMSGAHLP 773
           L +T+ +  + CP+P+Y   +++  LT+    +P
Sbjct: 624 LNSTNVTLSTKCPYPSY--YSYIGVLTLVATSMP 655


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,129
Number of Sequences: 438
Number of extensions: 4769
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)