Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021856
         (805 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q661J8 Cluster: Sensor protein; n=3; Borrelia burgdorfe...    35   2.8  
UniRef50_UPI0000F2E8C7 Cluster: PREDICTED: hypothetical protein;...    34   4.8  
UniRef50_Q4SWK1 Cluster: Chromosome 12 SCAF13614, whole genome s...    33   8.4  

>UniRef50_Q661J8 Cluster: Sensor protein; n=3; Borrelia burgdorferi
            group|Rep: Sensor protein - Borrelia garinii
          Length = 1496

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 27/72 (37%), Positives = 36/72 (50%)
 Frame = -2

Query: 417  FSVRLRELLPD*YCVRNFATFKFTHFKALKHYSYLYKLKMMHGFDF*MILCKKNFNKILF 238
            F+  +  L PD   V+    F +   KALK+  Y+Y  K + G     IL KK F KI  
Sbjct: 1085 FANNIERLSPD---VQIIFLFYYLDNKALKNLKYMYVKKPLMGLGISSILSKKEF-KIET 1140

Query: 237  DVEN*LVAVDGA 202
            D E+ LV +D A
Sbjct: 1141 DFED-LVPIDSA 1151


>UniRef50_UPI0000F2E8C7 Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 555

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 19/38 (50%), Positives = 24/38 (63%)
 Frame = +2

Query: 521 GRRAEGGSARAYTTTLAAACSAHA*VPIHPPLAPTVPI 634
           GRRA+ GS R+Y +  AAA +A A  P H PL P  P+
Sbjct: 39  GRRAKEGSRRSYDSGPAAARAARA-SPSHLPLPPPSPL 75


>UniRef50_Q4SWK1 Cluster: Chromosome 12 SCAF13614, whole genome
           shotgun sequence; n=5; Tetraodontidae|Rep: Chromosome 12
           SCAF13614, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 835

 Score = 33.1 bits (72), Expect = 8.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 608 PPLAPTVPIMLRAGARHPDAAECRS 682
           PP +P  P+ LR+G  HPD A  RS
Sbjct: 292 PPASPLPPLTLRSGTTHPDGARRRS 316


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 611,858,811
Number of Sequences: 1657284
Number of extensions: 11162459
Number of successful extensions: 35455
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35437
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69143070360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)