Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021856
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    27   2.4  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    27   4.1  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    26   5.5  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    25   9.5  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
            Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 337  LEMCEFERCEVSDAISIWQQLAESD*KQVLNVLKNSDLIRDHY 465
            L  C+FE  +  + ISI+      D  +V  VL    +  DHY
Sbjct: 1100 LSSCKFEGYDPQNLISIYPPARFGDVTEVTKVLNRESVKLDHY 1142


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 671 ECRSPVASTSRDDVDSAQQLYATLNEYLLLDKS 769
           E +S VAS S+D+V S+  L  + +  LL D+S
Sbjct: 148 EQKSSVASASKDNVSSSSILQGSASSKLLPDQS 180


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 387 LATARGV*LKTSFKCIKELGFDP*SLH*FSAYEVLGPSRPVS-SRRVVEQRGDRH 548
           LA   G  L+T  KC+K++ FD       S   +      +S  R+V+ Q GD H
Sbjct: 145 LANCNG--LRTITKCVKDVSFDEFRKDVISCSTIENKIMAISFCRKVLGQTGDGH 197


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +2

Query: 503 PGLKSSGRRAEGGSARAYTTTLAAACSAHA*VPIHPPLAPTVPIMLRAGARHPDAAECR 679
           PGL   GR    GS       LA   + ++ V IH P AP   ++  A   +P++   R
Sbjct: 25  PGLGHEGRMVPTGSKVELPFWLAEVLAINSFVSIHMP-APFSSVVRNALKANPNSVSIR 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,639
Number of Sequences: 5004
Number of extensions: 43844
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)