Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021856
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991... 32 0.46
11_01_0106 - 792190-792730,793905-794018,794206-794540 29 3.3
10_08_0118 + 14948636-14949667,14949893-14949953,14951226-14951977 29 3.3
01_01_0844 - 6586345-6586854 29 3.3
02_03_0243 - 16791789-16793306 29 5.7
05_05_0284 + 23851033-23851279,23851514-23851827 28 7.6
03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917... 28 7.6
07_01_0895 + 7506460-7507929 28 10.0
>12_02_0692 - 22197582-22198214,22198761-22198935,22199089-22199185,
22199359-22199473,22199546-22199633,22199972-22200063,
22200138-22200629,22201025-22201048,22201348-22203489
Length = 1285
Score = 32.3 bits (70), Expect = 0.46
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +2
Query: 485 GTRAFAPGLKSSGRRAEGGSARAYTTTLAAACSAHA*V-PIHPPLAPTVPIMLRAGARHP 661
G +P + G+RA GSARA ++ + + P++ P V ML G+R P
Sbjct: 1208 GPSGASPAVNGGGKRAADGSARATARSVLKEVNRNTPTPPLNSMSVPKVRSMLGVGSRRP 1267
Query: 662 DAAECRSPVASTSRDD 709
E + DD
Sbjct: 1268 AVLESVRRLEPFGSDD 1283
>11_01_0106 - 792190-792730,793905-794018,794206-794540
Length = 329
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +2
Query: 512 KSSGRRAEGGSARAYTTTLAAACSAHA*VPIHPPLAPTV-PIMLRAGARHPDAAECRSPV 688
K + +R GG A YT A S H I P L P + +R H A SP
Sbjct: 166 KKTVQRNGGGGAAGYT---VAYISEHTCKSIEPSLPPVILDTTVRTTNNHQQPAAAESPA 222
Query: 689 ASTS 700
A++S
Sbjct: 223 ATSS 226
>10_08_0118 + 14948636-14949667,14949893-14949953,14951226-14951977
Length = 614
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = -1
Query: 664 IRVPRARSQHDRDGWRERRVNRHLSVRRASSG*CRCICPCRSPLCSTTRRLETGR 500
+RV A RDGW V RH +V+ G R +C CRSPL + T R
Sbjct: 460 VRVIDADHGSGRDGWFSIEVARH-TVKDEIVGLRRHVC-CRSPLVGSAGWPRTSR 512
>01_01_0844 - 6586345-6586854
Length = 169
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -2
Query: 591 ACAEQAAANVVVYARADPPSARRPDDLRPGAKALVP 484
A A A A V + P ARRP DL P A L+P
Sbjct: 7 AAAALALAAAVCFLLVAPAPARRPADLPPQAAVLLP 42
>02_03_0243 - 16791789-16793306
Length = 505
Score = 28.7 bits (61), Expect = 5.7
Identities = 21/75 (28%), Positives = 30/75 (40%)
Frame = +2
Query: 491 RAFAPGLKSSGRRAEGGSARAYTTTLAAACSAHA*VPIHPPLAPTVPIMLRAGARHPDAA 670
RA APG+ +G S+ + T AA C+ A P PP+ I R A
Sbjct: 166 RALAPGVTVHHAACDGASSTHFLHTWAAICAGAAATP-PPPVIDRTSIREREDIHDVMTA 224
Query: 671 ECRSPVASTSRDDVD 715
V +T+ + D
Sbjct: 225 RLHDHVKTTTINSPD 239
>05_05_0284 + 23851033-23851279,23851514-23851827
Length = 186
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = +2
Query: 500 APGLKSSGRRAEGGSARAYTTTLAAACSAHA*VPIHPPLAPTVPIMLRAGARHPDAAECR 679
A +S+G A S A AAA S A + PPL + R + PD +C
Sbjct: 31 AAASRSAGLAAAAASRAARLA--AAAASRAARLKPRPPLDDAARLSFRYSSEPPDDGKC- 87
Query: 680 SPVASTSRDDVDSAQQLYATLNEY 751
+++D++S + ++A Y
Sbjct: 88 -----VTKEDLESDEAVWALFERY 106
>03_02_0955 -
12690405-12690842,12690940-12691130,12691208-12691718,
12692240-12693171,12693260-12693351,12693430-12693509,
12693568-12693621,12693734-12693850,12693949-12694194,
12694273-12694432,12694512-12694576,12694686-12694877,
12694980-12695061,12695153-12695925
Length = 1310
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 557 TTTLAAACSAHA*VPIHPPLAPTVPIMLRAGARHPDAA 670
+ + AAA +A+ P P PT +LR +R P AA
Sbjct: 2 SASAAAAAAAYGTPPSQQPPPPTAESVLRVASRDPSAA 39
>07_01_0895 + 7506460-7507929
Length = 489
Score = 27.9 bits (59), Expect = 10.0
Identities = 29/85 (34%), Positives = 38/85 (44%)
Frame = -2
Query: 702 RDVDATGERHSAASGCLAPALNMIGTVGASGG*IGT*ACAEQAAANVVVYARADPPSARR 523
R DATG + + P +IG+ G + T A A AAAN+ RAD RR
Sbjct: 43 RGHDATGHDATDDDKAVLPLRRLIGSRGYASSSDATNAAA-SAAANIAA-PRADSRRRRR 100
Query: 522 PDDLRPGAKALVPHKLRISVVITDQ 448
P AKA K + VV+ D+
Sbjct: 101 ----SPAAKAKA--KQHLYVVLNDR 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,611,551
Number of Sequences: 37544
Number of extensions: 318415
Number of successful extensions: 1128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -