Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021856
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38453| Best HMM Match : Sulfatase (HMM E-Value=3.1e-06)             35   0.089
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.47 
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.83 
SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)                    28   7.7  
SB_43373| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7)                28   7.7  

>SB_38453| Best HMM Match : Sulfatase (HMM E-Value=3.1e-06)
          Length = 473

 Score = 34.7 bits (76), Expect = 0.089
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 2   PVYLVRSYVRHLLSYFASLNLTFFVVLTEYTYSFIYNLIKHH 127
           P++ V S +R L  YF  LNLTFF+ + +     I  L+  H
Sbjct: 82  PIHTVFSVLRALADYFPQLNLTFFIQILDADPMAITELVSKH 123


>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = -1

Query: 619  RERRVNRHLSVRRASSG*CRCICPCRSP 536
            R R   R LS RRA+ G CRCI  CR+P
Sbjct: 2181 RYRGELRGLSGRRAARGRCRCIQSCRAP 2208


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 602 IHPPLAPTVPIMLRAGARHPDAAEC--RSPVAS 694
           I P   PT P+    G+R PD A C  RSPV+S
Sbjct: 318 ISPVTTPTAPVEREEGSRSPDHALCSNRSPVSS 350


>SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)
          Length = 924

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +3

Query: 495 PSRPVSSRRVVEQRGDRHGH 554
           PSRP SS   VEQR D  GH
Sbjct: 369 PSRPTSSASDVEQRLDESGH 388


>SB_43373| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7)
          Length = 273

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 599 PIHPPLAPTVPIMLRAGARHPDAAECRSPVASTS 700
           P+HPP  P+    L  G  HP+  E  +P + T+
Sbjct: 66  PVHPPEEPSPDDQLPTGGDHPE-TEFEAPASDTA 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,205,108
Number of Sequences: 59808
Number of extensions: 348264
Number of successful extensions: 904
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)