Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021856
         (805 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical protein
            F40F4.6 protein.
          Length = 2214

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 623  TVPIMLRAGARHPDAAECRSP 685
            TVPI +  G R+PD A C  P
Sbjct: 1501 TVPICVNGGTRNPDEATCSCP 1521


>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical
           protein F48C1.1 protein.
          Length = 1064

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = +2

Query: 11  LVRSYVRHLLSYFASLNLTFFVVLTEYTYSFIYNLIKHH*RASVKKFLNLRSLFKFSENL 190
           L  S  R +L    ++++ FF +L  +  ++   L +H+    + + +N+RS  K + NL
Sbjct: 22  LALSAKRKVLLNPKTVSIYFFAILFTFLLAYHQRLGQHNNELHISRVVNMRSFVKEANNL 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,208,695
Number of Sequences: 27780
Number of extensions: 262603
Number of successful extensions: 777
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)