Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021856
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   2.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 596 VPIHPPLAPTVPIMLRAGARHPDAAECRSP 685
           +P  PP+ P +   L   A HP+  +   P
Sbjct: 103 IPTAPPIPPEIQRALEWNAAHPEEDDGGQP 132


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +2

Query: 44  YFASLNLTFFVVLTEYTYSFIYNLIKHH*RASVKKFLNLRSLFKFS 181
           +F  + + F   + +Y Y  + +++  H R  +    NL    KFS
Sbjct: 65  FFDQMGVHFVGFVGQYGYDRVLSVLGRHVRDFLNGLDNLHEYLKFS 110


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 47  FASLNLTFFVVLTEY 91
           FA LN+T++++  EY
Sbjct: 413 FAVLNVTYWIMFAEY 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,540
Number of Sequences: 438
Number of extensions: 2786
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)