Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021856
         (805 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48430.1 68418.m05988 expressed protein low similarity to ext...    31   1.2  
At1g61440.1 68414.m06923 S-locus protein kinase, putative contai...    28   6.3  

>At5g48430.1 68418.m05988 expressed protein low similarity to
           extracellular dermal glycoprotein EDGP precursor [Daucus
           carota] GI:285741, SP|P13917 Basic 7S globulin precursor
           {Glycine max}; expression supported by MPSS
          Length = 406

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 589 VRRASSG*CRCICPCRSPLCSTTRR 515
           VR+ + G  R I PC SP+C+ TRR
Sbjct: 62  VRKCNDGLPRPIVPCGSPVCALTRR 86


>At1g61440.1 68414.m06923 S-locus protein kinase, putative contains
           similarity to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 792

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 50  ASLNLTFFVVLTEYTYSFIYNLIKHH 127
           ++++LT FV+L   T+ F  N +KHH
Sbjct: 423 STVSLTLFVILGFATFGFWRNRVKHH 448


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,040,676
Number of Sequences: 28952
Number of extensions: 228779
Number of successful extensions: 531
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)