Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021855
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...   153   2e-38
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    27   4.0  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    26   5.3  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    25   9.3  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   9.3  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score =  153 bits (372), Expect = 2e-38
 Identities = 78/174 (44%), Positives = 105/174 (60%)
 Frame = +3

Query: 255  LISLLEAALGLERAHMGMFTELAILYSKYKPVKMREHLELFWSRVNIPKVLRAAEHAHLW 434
            +ISL+EA LGLERAHM  +TELAILY+KYKP +M EHL+LFW R+N+ KV+RA +  HLW
Sbjct: 1295 VISLMEAGLGLERAHMAFYTELAILYAKYKPERMMEHLKLFWGRLNMAKVIRACDQMHLW 1354

Query: 435  SELVFLYDKYEEYDNAALTMMQHPTRLGARDTSKT*SLKSRTWNCTTKLSNFT*TTSHFL 614
            +E VFLY   + YDNAA  MM+ P       + K   +         +  NF       L
Sbjct: 1355 NEAVFLYVHDQSYDNAAAVMMEQPEAFD-HQSFKDIIVHVANLELYYRALNFYLEQHPML 1413

Query: 615  LNDLLLVLAPRMDHTRAVNFFTKAGHLQLVKAYLRSVQSLNNKAVNEALTRCLL 776
            L DLL  L PR+DH R +  F K+ +  L+  ++ ++Q LN +AVN A    L+
Sbjct: 1414 LTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQHLNIQAVNHAYNDLLI 1467



 Score =  116 bits (280), Expect = 3e-27
 Identities = 50/85 (58%), Positives = 71/85 (83%)
 Frame = +1

Query: 1    AKLLYNNVSNFARLAITLVHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCG 180
            AKL+Y+++SN++ LA TLV+L E+QGAVD ARKANS + WK+V  AC+D  EFRLAQ+CG
Sbjct: 1210 AKLMYSSISNWSMLATTLVYLGEYQGAVDCARKANSIKVWKQVGTACIDKREFRLAQICG 1269

Query: 181  LHIVVHADELEDLINYYQDRGHFDD 255
            L+++VHA+EL  LI  Y++RG+F++
Sbjct: 1270 LNLIVHAEELPGLIRLYEERGYFEE 1294


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 13  YNNVSNFARLAITLVHLKEFQGAVDSARKANSTRTWKEVC 132
           Y N    + + ++L HLK F+ +++S    ++   +K VC
Sbjct: 46  YGNTCYVSSVLVSLYHLKPFRDSLNSYPLPSAPPNFKSVC 85


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 153 TGVHAREADLLPCARRVGLTRAVHGT 76
           TGV + +  L P AR  G  RA HGT
Sbjct: 416 TGVPSAQEVLFPFARSRGFMRAHHGT 441


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/57 (24%), Positives = 24/57 (42%)
 Frame = +1

Query: 526 TLQRHNH*SREHGTVLQSYPILPRLQATFSLTIYC*YWPHAWITLEQLTSSPKLVIC 696
           TL    + S  + +V+ S      + AT + T+ C     AW+    L  +P   +C
Sbjct: 311 TLTDFPYLSSRYASVIPSASYESTMSATLTATMSCQATNSAWMAATSLPPTPSEAVC 367


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 222 DEVFKFVSMYYNVQSAHLRESEFTGVHAREADLLPCARRVGL 97
           D +FK V++    +  HL++S  + + A E   + C R++ L
Sbjct: 297 DHLFKKVTIVLVGKYTHLQDSYISVIKALEHSAMRCGRKLDL 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,705
Number of Sequences: 5004
Number of extensions: 59166
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)