Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021855
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 164 6e-41
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 163 1e-40
01_06_0141 - 26905855-26906928 30 2.4
09_06_0171 - 21308993-21309671,21309768-21309862,21309944-213100... 29 5.5
07_03_0837 + 21870106-21870509,21870601-21870778 28 9.7
02_01_0114 - 857835-859464,860403-860444,860530-860537 28 9.7
>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 164 bits (399), Expect = 6e-41
Identities = 84/169 (49%), Positives = 112/169 (66%)
Frame = +3
Query: 255 LISLLEAALGLERAHMGMFTELAILYSKYKPVKMREHLELFWSRVNIPKVLRAAEHAHLW 434
LISL+E+ LGLERAHMG+FTEL +LY++Y+P K+ EH++LF +R+NIPK++RA + W
Sbjct: 1313 LISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHW 1372
Query: 435 SELVFLYDKYEEYDNAALTMMQHPTRLGARDTSKT*SLKSRTWNCTTKLSNFT*TTSHFL 614
EL +LY +Y+E+DNAA T+M H K ++K K +F L
Sbjct: 1373 KELTYLYIQYDEFDNAATTIMNHSPDAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDL 1432
Query: 615 LNDLLLVLAPRMDHTRAVNFFTKAGHLQLVKAYLRSVQSLNNKAVNEAL 761
+NDLL VLA R+DHTR V+ KAG L LVK Y+ +VQS N AVNEAL
Sbjct: 1433 INDLLNVLALRLDHTRVVDIMRKAGQLHLVKPYMVAVQSNNVSAVNEAL 1481
Score = 131 bits (317), Expect = 5e-31
Identities = 57/85 (67%), Positives = 75/85 (88%)
Frame = +1
Query: 1 AKLLYNNVSNFARLAITLVHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCG 180
AK++Y +SN+A+LA+TLV LK+FQGAVD+ARKANS +TWKEVCFACVDA EFRLAQ+CG
Sbjct: 1228 AKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICG 1287
Query: 181 LHIVVHADELEDLINYYQDRGHFDD 255
L+I+V D+LE++ YYQ+RG F++
Sbjct: 1288 LNIIVQVDDLEEVSEYYQNRGCFNE 1312
>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 163 bits (396), Expect = 1e-40
Identities = 83/169 (49%), Positives = 112/169 (66%)
Frame = +3
Query: 255 LISLLEAALGLERAHMGMFTELAILYSKYKPVKMREHLELFWSRVNIPKVLRAAEHAHLW 434
LISL+E+ LGLERAHMG+FTEL +LY++Y+P K+ EH++LF +R+NIPK++RA + W
Sbjct: 1313 LISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHW 1372
Query: 435 SELVFLYDKYEEYDNAALTMMQHPTRLGARDTSKT*SLKSRTWNCTTKLSNFT*TTSHFL 614
EL +LY +Y+E+DNAA T+M H K ++K K +F L
Sbjct: 1373 KELTYLYIQYDEFDNAATTIMNHSPDAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDL 1432
Query: 615 LNDLLLVLAPRMDHTRAVNFFTKAGHLQLVKAYLRSVQSLNNKAVNEAL 761
+NDLL VLA R+DHTR V+ KAG L LVK Y+ +VQS N AVNE+L
Sbjct: 1433 INDLLNVLALRLDHTRVVDIMRKAGQLHLVKPYMVAVQSNNVSAVNESL 1481
Score = 131 bits (317), Expect = 5e-31
Identities = 57/85 (67%), Positives = 75/85 (88%)
Frame = +1
Query: 1 AKLLYNNVSNFARLAITLVHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCG 180
AK++Y +SN+A+LA+TLV LK+FQGAVD+ARKANS +TWKEVCFACVDA EFRLAQ+CG
Sbjct: 1228 AKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICG 1287
Query: 181 LHIVVHADELEDLINYYQDRGHFDD 255
L+I+V D+LE++ YYQ+RG F++
Sbjct: 1288 LNIIVQVDDLEEVSEYYQNRGCFNE 1312
>01_06_0141 - 26905855-26906928
Length = 357
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Frame = +1
Query: 37 RLAITLV--HLKEFQGAVDSARKANSTRTWKEVCFACVDA 150
RLA+T++ H+++ + + +R T TW++V +AC+DA
Sbjct: 298 RLALTVMGAHMEKEKN-ITKSRWGEPTLTWEQVNYACIDA 336
>09_06_0171 -
21308993-21309671,21309768-21309862,21309944-21310084,
21310177-21310348,21310445-21310548,21311254-21311370
Length = 435
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -3
Query: 189 NVQSAHLRESEFTGVHAREADLLPCARRVGLTRAVHGTLKFFQMHQSNSKTGEVADVVIQ 10
+++S H+ + E T A + R + TR VH +KF NS+T + +D IQ
Sbjct: 313 SIESNHVEDKEDTEQVELSARRMR-KRNIRSTRKVHSEIKFDDSEGLNSETEDESDTEIQ 371
>07_03_0837 + 21870106-21870509,21870601-21870778
Length = 193
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 98 RPTLRAHGRRSASRAWTPVNSDSRKCADCTL 190
RPT RR A R W+ V RK A C+L
Sbjct: 70 RPTAVVDWRRIARRRWSLVPRHIRKAAGCSL 100
>02_01_0114 - 857835-859464,860403-860444,860530-860537
Length = 559
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 61 LKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCGLHIV 192
L+E + +D W+ + AC+ G RLA++ G+ I+
Sbjct: 418 LEEAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAEIAGMEII 461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,226,233
Number of Sequences: 37544
Number of extensions: 402493
Number of successful extensions: 1047
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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