Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021855
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)             237   7e-63
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)               31   0.80 
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   30   2.4  
SB_54895| Best HMM Match : S1 (HMM E-Value=4.3)                        29   5.6  
SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score =  237 bits (580), Expect = 7e-63
 Identities = 122/174 (70%), Positives = 128/174 (73%)
 Frame = +3

Query: 255  LISLLEAALGLERAHMGMFTELAILYSKYKPVKMREHLELFWSRVNIPKVLRAAEHAHLW 434
            LI L+EAALGLERAHMGMFTELAILYSKYKP KMREHLELFWSRVNIPKVLRAAE AHLW
Sbjct: 1124 LIGLMEAALGLERAHMGMFTELAILYSKYKPSKMREHLELFWSRVNIPKVLRAAEQAHLW 1183

Query: 435  SELVFLYDKYEEYDNAALTMMQHPTRLGARDTSKT*SLKSRTWNCTTKLSNFT*TTSHFL 614
            SELVFLY+KYEEYDNA  TMMQHPT        K    K        +   F       L
Sbjct: 1184 SELVFLYEKYEEYDNAVQTMMQHPTVAWKEGLFKDVICKVANIELYYRSLQFYLDFKPML 1243

Query: 615  LNDLLLVLAPRMDHTRAVNFFTKAGHLQLVKAYLRSVQSLNNKAVNEALTRCLL 776
            LNDLLLVL PRMDHTRAV FF K  HL LVK YLRSVQS NNK++NEAL   L+
Sbjct: 1244 LNDLLLVLTPRMDHTRAVAFFAKVKHLPLVKPYLRSVQSHNNKSINEALNDLLI 1297



 Score =  159 bits (385), Expect = 3e-39
 Identities = 70/85 (82%), Positives = 79/85 (92%)
 Frame = +1

Query: 1    AKLLYNNVSNFARLAITLVHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCG 180
            AKLLYNN+SNFA+LA TLVHL E+Q AVD ARKANST+TWKEVCFACVD GEFR+AQMCG
Sbjct: 1039 AKLLYNNISNFAKLASTLVHLGEYQAAVDGARKANSTKTWKEVCFACVDGGEFRMAQMCG 1098

Query: 181  LHIVVHADELEDLINYYQDRGHFDD 255
            LHIVVHADELE+LINYYQ+RG F++
Sbjct: 1099 LHIVVHADELEELINYYQNRGFFEE 1123


>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
          Length = 1066

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +1

Query: 55  VHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCGLHIVVHADELEDLINYYQ 234
           + L E + A + A +A   R WK++    +   +F+LAQ C LH   HA +   L+    
Sbjct: 546 IQLGELRTAYEIAMEAEVERKWKQLAELAISKCQFQLAQEC-LH---HAQDFGGLLLLAT 601

Query: 235 DRGHFD 252
             G  D
Sbjct: 602 SSGDAD 607


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 540  MSLKCPSRQASWDAASS*EQRCHTPHTCHTGIPALTKDGHVQQHGV 403
            +S+KC S  ++    +S +   HTPH   T +P    D H  ++ +
Sbjct: 1949 LSVKCASHSSNSSTTTSSQDSPHTPHLT-TSVPYAQMDNHTSKNNL 1993


>SB_54895| Best HMM Match : S1 (HMM E-Value=4.3)
          Length = 479

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = +2

Query: 8   SCITTSATSPVLLLLWCI*KNFKVPWTARVRPTLRAHGRRSASRAWTPVNSDSRKCAD 181
           S  TTS + P      C  ++  VP    V    +AH    AS  W PV   SRK  D
Sbjct: 254 SAATTSTSLPPASKKLC--RSLSVPAEETVELQEQAHWIPRASNVWQPVKGMSRKRTD 309


>SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 142 VDAGEFRLAQMCGLHIVVHADELEDLINYY 231
           ++A E R   +CG+   +  DEL+D++ YY
Sbjct: 238 IEASELR-DLLCGMEKKIPEDELQDMLRYY 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,434,328
Number of Sequences: 59808
Number of extensions: 457810
Number of successful extensions: 1322
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)