Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021855
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   4.3  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   5.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.8  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 411 AAEHAHLWSELVFLYDKYEEYDNA 482
           A E  + WS + + YD  E  D+A
Sbjct: 153 AMELVYAWSTIDYTYDSIEARDSA 176


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = -3

Query: 483 QRCHTPHTCHTGIPALTKDGHVQQHGVPWEC*RVTRTVRGAPSSSR 346
           ++ H P T    +P     G + Q+G      R+  ++ G  S S+
Sbjct: 46  RKFHKPITLTIPVPQAANKGMINQYGGEQPTLRLLCSIAGGTSESQ 91


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/40 (20%), Positives = 16/40 (40%)
 Frame = -3

Query: 531 KCPSRQASWDAASS*EQRCHTPHTCHTGIPALTKDGHVQQ 412
           KC      +    +  Q C TP + H  +  + + G  ++
Sbjct: 364 KCSQTSVHYSNGQTHSQLCPTPRSTHLKVSGINRVGSTRR 403


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 181 LHIVVHADELEDLINYYQDRGHFDD 255
           L++++ A    +L    +D+GHFDD
Sbjct: 441 LYMLMEACLGGELWTVLRDKGHFDD 465


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,386
Number of Sequences: 438
Number of extensions: 3814
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)