Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021855
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ...   162   3e-40
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ...   162   3e-40
At4g38210.1 68417.m05393 expansin, putative (EXP20) similar to a...    31   0.66 
At2g04690.1 68415.m00479 cellular repressor of E1A-stimulated ge...    29   3.5  
At3g22080.1 68416.m02786 meprin and TRAF homology domain-contain...    28   8.1  
At1g65920.1 68414.m07480 regulator of chromosome condensation (R...    28   8.1  

>At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to
            Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
            sapiens]
          Length = 1705

 Score =  162 bits (393), Expect = 3e-40
 Identities = 82/169 (48%), Positives = 111/169 (65%)
 Frame = +3

Query: 255  LISLLEAALGLERAHMGMFTELAILYSKYKPVKMREHLELFWSRVNIPKVLRAAEHAHLW 434
            LISL+E+ LGLERAHMG+FTEL +LY++Y+  K+ EH++LF +R+NIPK++RA +    W
Sbjct: 1313 LISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHW 1372

Query: 435  SELVFLYDKYEEYDNAALTMMQHPTRLGARDTSKT*SLKSRTWNCTTKLSNFT*TTSHFL 614
             EL +LY +Y+E+DNAA T+M H          K    K        K  +F       +
Sbjct: 1373 QELTYLYIQYDEFDNAATTVMNHSPEAWEHMQFKDIVAKVANVELYYKAVHFYLQEHPDI 1432

Query: 615  LNDLLLVLAPRMDHTRAVNFFTKAGHLQLVKAYLRSVQSLNNKAVNEAL 761
            +NDLL VLA R+DHTR V+   KAGHL+L+K Y+ +VQS N  AVNEAL
Sbjct: 1433 INDLLNVLALRLDHTRVVDIMRKAGHLRLIKPYMVAVQSNNVSAVNEAL 1481



 Score =  129 bits (312), Expect = 2e-30
 Identities = 55/85 (64%), Positives = 75/85 (88%)
 Frame = +1

Query: 1    AKLLYNNVSNFARLAITLVHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCG 180
            AK++Y  +SN+A+LA+TLV L++FQGAVD+ARKANS +TWKEVCFACVDA EFRLAQ+CG
Sbjct: 1228 AKIIYAFISNWAKLAVTLVKLQQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICG 1287

Query: 181  LHIVVHADELEDLINYYQDRGHFDD 255
            L+I++  D+LE++  YYQ+RG F++
Sbjct: 1288 LNIIIQVDDLEEVSEYYQNRGCFNE 1312


>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
            Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
            sapiens]
          Length = 1703

 Score =  162 bits (393), Expect = 3e-40
 Identities = 82/169 (48%), Positives = 111/169 (65%)
 Frame = +3

Query: 255  LISLLEAALGLERAHMGMFTELAILYSKYKPVKMREHLELFWSRVNIPKVLRAAEHAHLW 434
            LISL+E+ LGLERAHMG+FTEL +LY++Y+  K+ EH++LF +R+NIPK++RA +    W
Sbjct: 1313 LISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHW 1372

Query: 435  SELVFLYDKYEEYDNAALTMMQHPTRLGARDTSKT*SLKSRTWNCTTKLSNFT*TTSHFL 614
             EL +LY +Y+E+DNAA T+M H          K    K        K  +F       +
Sbjct: 1373 QELTYLYIQYDEFDNAATTVMNHSPEAWEHMQFKDIVAKVANVELYYKAVHFYLQEHPDI 1432

Query: 615  LNDLLLVLAPRMDHTRAVNFFTKAGHLQLVKAYLRSVQSLNNKAVNEAL 761
            +NDLL VLA R+DHTR V+   KAGHL+L+K Y+ +VQS N  AVNEAL
Sbjct: 1433 INDLLNVLALRLDHTRVVDIMRKAGHLRLIKPYMIAVQSNNVSAVNEAL 1481



 Score =  128 bits (308), Expect = 5e-30
 Identities = 54/85 (63%), Positives = 74/85 (87%)
 Frame = +1

Query: 1    AKLLYNNVSNFARLAITLVHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCG 180
            AK++Y  +SN+ +LA+TLV L++FQGAVD+ARKANS +TWKEVCFACVDA EFRLAQ+CG
Sbjct: 1228 AKIIYAFISNWGKLAVTLVKLQQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICG 1287

Query: 181  LHIVVHADELEDLINYYQDRGHFDD 255
            L+I++  D+LE++  YYQ+RG F++
Sbjct: 1288 LNIIIQVDDLEEVSEYYQNRGCFNE 1312


>At4g38210.1 68417.m05393 expansin, putative (EXP20) similar to
           alpha-expansin 3 GI:6942322 from [Triphysaria
           versicolor]; alpha-expansin gene family, PMID:11641069
          Length = 256

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
 Frame = -3

Query: 171 LRESEFTGVHAREADLLP-------CARRVGLTRAVHGTLKFFQMHQSN-SKTGEVADVV 16
           L  + FTG+    A+++P       C RR GL  ++ G+  FFQ+  SN    GEV  V 
Sbjct: 132 LSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVK 191

Query: 15  IQ 10
           ++
Sbjct: 192 VK 193


>At2g04690.1 68415.m00479 cellular repressor of E1A-stimulated genes
           (CREG) family contains 1 transmembrane domain; similar
           to CREG2 (GI:24371079) [Homo sapiens] and (GI:24371081)
           [Mus musculus]; similar to cellular repressor of
           E1A-stimulated genes CREG (GI:3550343) [Homo sapiens]
          Length = 210

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 451 RNTSSDQRWACSAARSTLGMLTRDQNSSRCS-LIFTG 344
           RN   DQR + + + S LG  TRD  +  CS L  TG
Sbjct: 100 RNALKDQRASLAISESPLGTCTRDPMNPTCSKLTLTG 136


>At3g22080.1 68416.m02786 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 595

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 222 DEVFKFVSMYYNVQSAHLRESEFTGVHA 139
           DE   F+SMY  + S +L  S  TGV A
Sbjct: 60  DEGSGFISMYVEIDSTNLLSSPLTGVFA 87


>At1g65920.1 68414.m07480 regulator of chromosome condensation
           (RCC1) family protein / zinc finger protein-related
           contains Pfam profiles: regulator of chromosome
           condensation (RCC1), PF01363 FYVE zinc finger
          Length = 1006

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 451 RNTSSDQRWACSAARSTLGMLTRDQNSSRCSLIF 350
           +  S + + ACS+ +S  G   R  N   C L+F
Sbjct: 634 KEISLNDQTACSSCKSAFGFTRRKHNCYNCGLLF 667


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,901,558
Number of Sequences: 28952
Number of extensions: 310683
Number of successful extensions: 767
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)