Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021854
         (836 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    23   3.0  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    23   3.0  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   6.9  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    21   9.1  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   9.1  

>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 640 RVGTLRNNSCVPT 678
           RV T+++ SC+PT
Sbjct: 348 RVNTIKHTSCIPT 360


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 640 RVGTLRNNSCVPT 678
           RV T+++ SC+PT
Sbjct: 348 RVNTIKHTSCIPT 360


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 548 SFYSKFLHCY 577
           SF+ +F HCY
Sbjct: 417 SFFQQFFHCY 426


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 241 KWRLHPVQVSVGDKVLLPEY 300
           KW   P  V V ++V LP++
Sbjct: 16  KWNEGPNSVGVSNEVSLPQF 35


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 111 EEEPIVLLHWPFRFL 67
           EE P V +  PFRFL
Sbjct: 485 EERPDVKIFLPFRFL 499


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,264
Number of Sequences: 336
Number of extensions: 3607
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23036718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)