Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021854
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.06c |hsp10||mitochondrial heat shock protein Hsp10|Schiz...    43   5e-05
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    27   3.3  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    27   4.4  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    27   4.4  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   5.8  

>SPCC550.06c |hsp10||mitochondrial heat shock protein
           Hsp10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 104

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 20/48 (41%), Positives = 34/48 (70%)
 Frame = +1

Query: 238 RKWRLHPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKIE 381
           ++ +L    V+VGD+VLLP YGG+ + +   E+EY L+R+ ++LA I+
Sbjct: 58  KEGKLAQPSVAVGDRVLLPAYGGSNIKV--GEEEYSLYRDHELLAIIK 103



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +3

Query: 87  AVKRLVPLLDRVLIKRAEAITKTAGGL 167
           + K +VPLLDR+L++R +A TKTA G+
Sbjct: 7   SAKSIVPLLDRILVQRIKADTKTASGI 33


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 203 GEVVAVGPGARKENGDFTPFKLVWVIKFFFQN 298
           GEV+  G   RK N DF PFK +   ++   N
Sbjct: 95  GEVIMEGNKTRKLNIDFEPFKPINTSQYLCDN 126


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 628 AFYKRVGTLRNNSCVPTYY 684
           AFY +   LR N C+PTY+
Sbjct: 118 AFYHQKWALRLNPCLPTYF 136


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 685 YSMLGHKNCSSTYQLVYKMHAPFEVRLVY 599
           Y  L H++  S Y  V + + PFE R V+
Sbjct: 288 YKKLSHRDAKSIYHHVRRAYNPFEDRCVW 316


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 21/68 (30%), Positives = 35/68 (51%)
 Frame = +1

Query: 301  GGTKVSLENDEKEYHLFRESDILAKIEN*MMVALTCDSNSVSLVVACANETLIWSCIFCE 480
            GG+  S  N   +Y L+RE     K+E+ MM      SN    V+ C N   ++SC+F +
Sbjct: 857  GGSSNSA-NISSQYRLWRE-----KLESEMM---RVSSNDDYQVLVCENLVGLFSCVFVK 907

Query: 481  VLILSQLQ 504
              + S+++
Sbjct: 908  NKLQSKIR 915


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,155
Number of Sequences: 5004
Number of extensions: 57831
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)