Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021854
         (836 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061     50   3e-06
03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413     41   0.001
09_04_0259 - 16182190-16182360,16183185-16183262,16184431-161845...    37   0.023
06_01_0676 + 4945361-4945531,4945632-4945811,4947145-4947300,494...    36   0.040
02_05_0964 - 33133516-33133689,33133780-33133857,33133997-331341...    33   0.37 
10_08_0968 + 21933627-21933785,21933893-21933943,21934094-219341...    32   0.49 
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510...    29   4.6  

>07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061
          Length = 98

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 26/44 (59%), Positives = 30/44 (68%)
 Frame = +1

Query: 247 RLHPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 378
           +L PV +  GD VLLPEYGG +V L   EKEY LFRE DIL  +
Sbjct: 54  KLIPVALKEGDTVLLPEYGGLEVKLA-AEKEYLLFREHDILGTL 96



 Score = 31.5 bits (68), Expect = 0.86
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = +2

Query: 164 IVIPEKAQSKVLQGEVVAVGPGARKENGDFTPFKL 268
           I++PE ++ ++  G+VVAVGPG R ++G   P  L
Sbjct: 27  ILLPETSK-QLNSGKVVAVGPGERDKDGKLIPVAL 60


>03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413
          Length = 126

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 21/35 (60%), Positives = 24/35 (68%)
 Frame = +1

Query: 238 RKWRLHPVQVSVGDKVLLPEYGGTKVSLENDEKEY 342
           R  +L PV +  GD VLLPEYGGT+V L   EKEY
Sbjct: 90  RDGKLIPVSLKEGDTVLLPEYGGTEVKLA--EKEY 122



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +3

Query: 87  AVKRLVPLLDRVLIKRAEAITKTAGGL 167
           A +RL+P ++RVL+++     K+AGG+
Sbjct: 2   AARRLIPSMNRVLVEKLLQPNKSAGGI 28


>09_04_0259 -
           16182190-16182360,16183185-16183262,16184431-16184586,
           16184913-16185092,16185875-16186027
          Length = 245

 Score = 36.7 bits (81), Expect = 0.023
 Identities = 20/26 (76%), Positives = 20/26 (76%)
 Frame = +3

Query: 90  VKRLVPLLDRVLIKRAEAITKTAGGL 167
           VK L PL DRVLIK AEA  KTAGGL
Sbjct: 150 VKDLKPLNDRVLIKVAEAEEKTAGGL 175


>06_01_0676 +
           4945361-4945531,4945632-4945811,4947145-4947300,
           4947460-4947537,4964041-4964214
          Length = 252

 Score = 35.9 bits (79), Expect = 0.040
 Identities = 19/26 (73%), Positives = 20/26 (76%)
 Frame = +3

Query: 90  VKRLVPLLDRVLIKRAEAITKTAGGL 167
           VK + PL DRVLIK AEA  KTAGGL
Sbjct: 156 VKDMKPLNDRVLIKVAEAEDKTAGGL 181



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +2

Query: 164 IVIPEKAQSKVLQGEVVAVGPG 229
           I++P  AQSK   GEVVAVG G
Sbjct: 83  ILLPSTAQSKPQGGEVVAVGEG 104


>02_05_0964 -
           33133516-33133689,33133780-33133857,33133997-33134152,
           33134685-33134864,33135516-33135695
          Length = 255

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 17/25 (68%), Positives = 18/25 (72%)
 Frame = +3

Query: 93  KRLVPLLDRVLIKRAEAITKTAGGL 167
           K + PL DRVLIK AEA  KT GGL
Sbjct: 160 KDMKPLSDRVLIKVAEAEDKTPGGL 184



 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 164 IVIPEKAQSKVLQGEVVAVGPG 229
           I++P  AQSK   GEVVA+G G
Sbjct: 86  ILLPSAAQSKPQGGEVVAIGEG 107


>10_08_0968 +
           21933627-21933785,21933893-21933943,21934094-21934129,
           21935011-21935076,21935163-21935210,21936424-21936453,
           21936651-21936719
          Length = 152

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 262 QVSVGDKVLLPEYGGTKVSLENDEKEYHLF-RESDILAKIE 381
           +V  G KVL  +    +V L  DEK  H F RESD+LA +E
Sbjct: 114 EVEAGKKVLFSDINAYEVDLGTDEK--HCFCRESDLLAVVE 152


>12_01_0618 -
           5099021-5099668,5099701-5100221,5100311-5100352,
           5100905-5100962
          Length = 422

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +2

Query: 68  KNRNGQCSKTIGSSSGPCP 124
           K++N +C KT+ SSSGPCP
Sbjct: 236 KDKN-ECLKTMRSSSGPCP 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,368,386
Number of Sequences: 37544
Number of extensions: 329247
Number of successful extensions: 738
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)