Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021854
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.65 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.1  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 113 GPCPDQKS*SYNQNCRRIVIPEKAQSKVLQGEVVAVGPGARKENGDFTPFKLV 271
           GP   ++S +Y     ++V  E+ Q    QG++  VG G  ++N +  P  LV
Sbjct: 654 GPVIPEQSLTYQDQQYQVVSVEQYQQLKEQGQISQVG-GGIQQNVEVLPENLV 705


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = +1

Query: 457 IWSCIFCEVLILSQL--QYC 510
           IWSC+F  +LIL  L  Q+C
Sbjct: 375 IWSCLFFFMLILIGLDSQFC 394


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = +1

Query: 457 IWSCIFCEVLILSQL--QYC 510
           IWSC+F  +LIL  L  Q+C
Sbjct: 428 IWSCLFFFMLILIGLDSQFC 447


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = -2

Query: 130 LIRTRSRRGTNRFTALAISIFN*QNSKAKNMSTMNA 23
           +IR+RSRR + RF++  +   +  +S++ + S + +
Sbjct: 16  IIRSRSRRYSKRFSSSIVDRRSPSSSRSPSPSLLTS 51


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 548 SFYSKFLHCY 577
           SF+ +F HCY
Sbjct: 421 SFFQQFFHCY 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,214
Number of Sequences: 438
Number of extensions: 3882
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)