Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021854
(836 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14980.1 68414.m01790 10 kDa chaperonin (CPN10) identical to ... 55 7e-08
At1g23100.1 68414.m02888 10 kDa chaperonin, putative similar to ... 50 3e-06
At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21) ... 35 0.077
At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21) ... 35 0.077
At3g52480.1 68416.m05771 expressed protein 31 0.95
At1g72120.1 68414.m08336 proton-dependent oligopeptide transport... 29 5.1
>At1g14980.1 68414.m01790 10 kDa chaperonin (CPN10) identical to
SP:P34893 from [Arabidopsis thaliana]
Length = 98
Score = 54.8 bits (126), Expect = 7e-08
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +1
Query: 247 RLHPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 378
+L PV V GD VLLPEYGGT+V L E EYHLFR+ D+L +
Sbjct: 54 KLIPVSVKEGDTVLLPEYGGTQVKL--GENEYHLFRDEDVLGTL 95
Score = 36.3 bits (80), Expect = 0.025
Identities = 16/32 (50%), Positives = 25/32 (78%)
Frame = +2
Query: 164 IVIPEKAQSKVLQGEVVAVGPGARKENGDFTP 259
I++PEK+ SK+ G+V+AVGPG+R ++G P
Sbjct: 27 ILLPEKS-SKLNSGKVIAVGPGSRDKDGKLIP 57
>At1g23100.1 68414.m02888 10 kDa chaperonin, putative similar to 10
kDa chaperonin SP:P34893 from [Arabidopsis thaliana]
Length = 97
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/47 (53%), Positives = 32/47 (68%)
Frame = +1
Query: 238 RKWRLHPVQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 378
R L PV V GD VLLPE+GGT+V L EKE+ L+R+ DI+A +
Sbjct: 51 RAGNLIPVSVKEGDNVLLPEFGGTQVKL--GEKEFLLYRDEDIMATL 95
Score = 34.7 bits (76), Expect = 0.077
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +2
Query: 164 IVIPEKAQSKVLQGEVVAVGPGARKENGDFTP 259
I++PEK+ S++ G V+AVGPGAR G+ P
Sbjct: 27 ILLPEKS-SQLNSGRVIAVGPGARDRAGNLIP 57
>At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21)
(CHCPN10) (CPN20) identical to chloroplast 20 kDa
chaperonin, chloroplast precursor (Protein Cpn21),
chloroplast protein Cpn10, chloroplast chaperonin 10
(Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
identical to cDNA chaperonin 20 GI:14587372
Length = 253
Score = 34.7 bits (76), Expect = 0.077
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = +3
Query: 90 VKRLVPLLDRVLIKRAEAITKTAGGL 167
+K L PL DRV IK AEA KTAGGL
Sbjct: 157 IKDLKPLNDRVFIKVAEAEEKTAGGL 182
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 164 IVIPEKAQSKVLQGEVVAVGPGARKENGDFTP 259
+++ E + K G V+AVGPG+ E G TP
Sbjct: 182 LLLTETTKEKPSIGTVIAVGPGSLDEEGKITP 213
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 164 IVIPEKAQSKVLQGEVVAVGPG 229
I++P AQSK GEVVAVG G
Sbjct: 84 ILLPSTAQSKPQGGEVVAVGEG 105
>At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21)
(CHCPN10) (CPN20) identical to chloroplast 20 kDa
chaperonin, chloroplast precursor (Protein Cpn21),
chloroplast protein Cpn10, chloroplast chaperonin 10
(Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
identical to cDNA chaperonin 20 GI:14587372
Length = 253
Score = 34.7 bits (76), Expect = 0.077
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = +3
Query: 90 VKRLVPLLDRVLIKRAEAITKTAGGL 167
+K L PL DRV IK AEA KTAGGL
Sbjct: 157 IKDLKPLNDRVFIKVAEAEEKTAGGL 182
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 164 IVIPEKAQSKVLQGEVVAVGPGARKENGDFTP 259
+++ E + K G V+AVGPG+ E G TP
Sbjct: 182 LLLTETTKEKPSIGTVIAVGPGSLDEEGKITP 213
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 164 IVIPEKAQSKVLQGEVVAVGPG 229
I++P AQSK GEVVAVG G
Sbjct: 84 ILLPSTAQSKPQGGEVVAVGEG 105
>At3g52480.1 68416.m05771 expressed protein
Length = 209
Score = 31.1 bits (67), Expect = 0.95
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 339 FFLIIFKAYFSTAVFWKKNFITHTNLNGVKSPFSFRAPGPTATTSPCKTL 190
F L+ A F+ ++WK+ F + + FS R TAT P K L
Sbjct: 16 FCLVAVTAQFAYVLWWKRRFRRRSIAGSERDAFSSRGGDLTATPPPSKEL 65
>At1g72120.1 68414.m08336 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 1095
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 66 LKIEMANAVKRLVPLLDRVLIKRAEAITKTAGGLSSQRRL 185
L++ ++ ++ VP+ DRVL+ +ITK G+++ +R+
Sbjct: 900 LQVLISISIVLFVPIYDRVLVPIGRSITKDPCGITTLKRI 939
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,541,877
Number of Sequences: 28952
Number of extensions: 289844
Number of successful extensions: 623
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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