Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021851
(667 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 168 7e-43
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 136 2e-33
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 136 2e-33
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 136 2e-33
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 136 2e-33
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 80 3e-16
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 42 1e-04
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 41 2e-04
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 40 2e-04
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 29 0.46
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 27 3.2
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 26 4.2
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 26 5.6
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 26 5.6
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch... 25 7.4
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 25 7.4
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 25 7.4
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 25 9.8
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 9.8
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.8
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 168 bits (408), Expect = 7e-43
Identities = 81/85 (95%), Positives = 85/85 (100%)
Frame = +3
Query: 255 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 434
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLI
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 120
Query: 435 FAGKQLEDGRTLSDYSIQKESTLHL 509
FAGKQLEDGRTLSDY+IQKESTLHL
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHL 145
Score = 168 bits (408), Expect = 7e-43
Identities = 81/85 (95%), Positives = 85/85 (100%)
Frame = +3
Query: 255 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 434
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 196
Query: 435 FAGKQLEDGRTLSDYSIQKESTLHL 509
FAGKQLEDGRTLSDY+IQKESTLHL
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHL 221
Score = 168 bits (408), Expect = 7e-43
Identities = 81/85 (95%), Positives = 85/85 (100%)
Frame = +3
Query: 255 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 434
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 272
Query: 435 FAGKQLEDGRTLSDYSIQKESTLHL 509
FAGKQLEDGRTLSDY+IQKESTLHL
Sbjct: 273 FAGKQLEDGRTLSDYNIQKESTLHL 297
Score = 168 bits (408), Expect = 7e-43
Identities = 81/85 (95%), Positives = 85/85 (100%)
Frame = +3
Query: 255 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLI 434
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 348
Query: 435 FAGKQLEDGRTLSDYSIQKESTLHL 509
FAGKQLEDGRTLSDY+IQKESTLHL
Sbjct: 349 FAGKQLEDGRTLSDYNIQKESTLHL 373
Score = 136 bits (330), Expect = 2e-33
Identities = 65/69 (94%), Positives = 69/69 (100%)
Frame = +3
Query: 303 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYS 482
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY+
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 483 IQKESTLHL 509
IQKESTLHL
Sbjct: 61 IQKESTLHL 69
Score = 120 bits (289), Expect = 2e-28
Identities = 57/63 (90%), Positives = 61/63 (96%)
Frame = +1
Query: 76 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYK 255
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 256 SRK 264
+K
Sbjct: 61 IQK 63
Score = 120 bits (289), Expect = 2e-28
Identities = 57/63 (90%), Positives = 61/63 (96%)
Frame = +1
Query: 76 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYK 255
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 256 SRK 264
+K
Sbjct: 137 IQK 139
Score = 120 bits (289), Expect = 2e-28
Identities = 57/63 (90%), Positives = 61/63 (96%)
Frame = +1
Query: 76 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYK 255
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 256 SRK 264
+K
Sbjct: 213 IQK 215
Score = 120 bits (289), Expect = 2e-28
Identities = 57/63 (90%), Positives = 61/63 (96%)
Frame = +1
Query: 76 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYK 255
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 256 SRK 264
+K
Sbjct: 289 IQK 291
Score = 120 bits (289), Expect = 2e-28
Identities = 57/63 (90%), Positives = 61/63 (96%)
Frame = +1
Query: 76 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYK 255
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 256 SRK 264
+K
Sbjct: 365 IQK 367
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +3
Query: 255 IQKESTLHLVLRLRGGM 305
IQKESTLHLVLRLRGG+
Sbjct: 365 IQKESTLHLVLRLRGGL 381
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 136 bits (330), Expect = 2e-33
Identities = 65/69 (94%), Positives = 69/69 (100%)
Frame = +3
Query: 303 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYS 482
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY+
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 483 IQKESTLHL 509
IQKESTLHL
Sbjct: 61 IQKESTLHL 69
Score = 120 bits (289), Expect = 2e-28
Identities = 57/63 (90%), Positives = 61/63 (96%)
Frame = +1
Query: 76 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYK 255
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 256 SRK 264
+K
Sbjct: 61 IQK 63
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/28 (67%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Frame = +3
Query: 255 IQKESTLHLVLRLRGG-MQIFVKTLTGK 335
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 136 bits (330), Expect = 2e-33
Identities = 65/69 (94%), Positives = 69/69 (100%)
Frame = +3
Query: 303 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYS 482
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY+
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 483 IQKESTLHL 509
IQKESTLHL
Sbjct: 61 IQKESTLHL 69
Score = 120 bits (289), Expect = 2e-28
Identities = 57/63 (90%), Positives = 61/63 (96%)
Frame = +1
Query: 76 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYK 255
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 256 SRK 264
+K
Sbjct: 61 IQK 63
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/28 (67%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Frame = +3
Query: 255 IQKESTLHLVLRLRGG-MQIFVKTLTGK 335
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 136 bits (330), Expect = 2e-33
Identities = 65/69 (94%), Positives = 69/69 (100%)
Frame = +3
Query: 303 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYS 482
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY+
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 483 IQKESTLHL 509
IQKESTLHL
Sbjct: 61 IQKESTLHL 69
Score = 120 bits (289), Expect = 2e-28
Identities = 57/63 (90%), Positives = 61/63 (96%)
Frame = +1
Query: 76 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYK 255
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 256 SRK 264
+K
Sbjct: 61 IQK 63
Score = 35.5 bits (78), Expect = 0.007
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 255 IQKESTLHLVLRLRGG 302
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 136 bits (330), Expect = 2e-33
Identities = 65/69 (94%), Positives = 69/69 (100%)
Frame = +3
Query: 303 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYS 482
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY+
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 483 IQKESTLHL 509
IQKESTLHL
Sbjct: 61 IQKESTLHL 69
Score = 120 bits (289), Expect = 2e-28
Identities = 57/63 (90%), Positives = 61/63 (96%)
Frame = +1
Query: 76 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYK 255
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 256 SRK 264
+K
Sbjct: 61 IQK 63
Score = 35.5 bits (78), Expect = 0.007
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +3
Query: 255 IQKESTLHLVLRLRGG 302
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 79.8 bits (188), Expect = 3e-16
Identities = 34/69 (49%), Positives = 49/69 (71%)
Frame = +3
Query: 303 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYS 482
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 483 IQKESTLHL 509
++ S LHL
Sbjct: 61 LEGGSVLHL 69
Score = 72.1 bits (169), Expect = 7e-14
Identities = 30/59 (50%), Positives = 43/59 (72%)
Frame = +1
Query: 76 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 252
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESY 59
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/54 (31%), Positives = 35/54 (64%)
Frame = +3
Query: 333 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYSIQKE 494
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +Y+I+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +3
Query: 330 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYSIQKESTL 503
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +1
Query: 103 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYKSRKN 267
GK LE+E ++T +K ++ +PP++Q++I G QL+D L + N
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPN 64
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/69 (27%), Positives = 37/69 (53%)
Frame = +3
Query: 303 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYS 482
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 483 IQKESTLHL 509
IQ ++HL
Sbjct: 64 IQDGHSIHL 72
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +1
Query: 70 TTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 249
T + + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L
Sbjct: 2 TNISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKT 61
Query: 250 YK 255
YK
Sbjct: 62 YK 63
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 29.5 bits (63), Expect = 0.46
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3
Query: 656 KPFICNSEKKLEYL-KCFAYFCFRSVN 579
KPF+ N+ ++E L KCF F F+S N
Sbjct: 620 KPFVVNATTEMEMLLKCFQVFFFKSKN 646
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 34 DNFNNFCEFQKETTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDK 174
+N N F ETT + L + + +++E + EN+K+ ++ K
Sbjct: 222 NNLNQIVRFIFETTADMIGIDLAKRQVPIQLERTSASENLKSNLKIK 268
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 414 EEFPLCPESLLSHSQWCQMLQL 349
EEF LC ESLL+H +QL
Sbjct: 345 EEFKLCKESLLAHKNSIYDVQL 366
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 375 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYSIQKESTLHLF*DSV 524
+++A + KE ++ R+I +G G SDYS+ +E +HL D +
Sbjct: 331 SIEASDRFKENSMWEKNRMITSGVSKAPGLE-SDYSLMEERRVHLLVDEL 379
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 25.8 bits (54), Expect = 5.6
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +1
Query: 25 TICDNFN----NFCEFQKETTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPD 192
T+ DNF+ NFC + +KT+ I VEA ++ + V I+D + PD
Sbjct: 164 TLSDNFDRLVLNFCRNIFQLVKSGHIKTIV--QIFKIVEAEESSDEVLKSIRDAKSSLPD 221
Query: 193 QQ 198
Q
Sbjct: 222 SQ 223
>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 583 TLRKQKYAKHFRYSNFFSELQI 648
TLR+ K +HFR+ N S L I
Sbjct: 82 TLREIKLLRHFRHENIISILDI 103
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +1
Query: 4 PSCTT-CPTICDNFNNFCEFQ---KETTMQIFVKTLTGKTITLEVEASDTIENVKAKIQD 171
PSC+ ++ D+ N +Q +T + +VK + GKT L VE + +E KA + +
Sbjct: 202 PSCSRDVKSLLDHLYNSYFYQLLMTKTPVVFYVKQMVGKTRQLAVEVHNHVEE-KALVDE 260
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 371 NGVRCFNF*CDGFTGKCFHKDLHATT 294
+G + +N CD F GKCFHK AT+
Sbjct: 21 DGYKIYN--CDPF-GKCFHKIQGATS 43
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 25.0 bits (52), Expect = 9.8
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = +1
Query: 457 MAVHYLTTASRKNLLYICFETPW 525
+A ++ + +NLL++C +PW
Sbjct: 154 LACSKISNETAENLLFLCLSSPW 176
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 34 DNFNNFCEFQKETTMQIFVKTLTGKTITLEVEASDTIEN 150
D+ N +F K QIF + G TIT +E I N
Sbjct: 18 DSLNGTWDFLKTGVSQIFERLDEGMTITKYMELYTAIHN 56
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -3
Query: 599 FCFRSVNQTTNSNTTIFNS 543
FCFR+++Q++N+N + +S
Sbjct: 22 FCFRNLSQSSNNNVSYASS 40
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,205
Number of Sequences: 5004
Number of extensions: 53059
Number of successful extensions: 189
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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