Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021850
(747 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76965.1 68414.m08961 glycine-rich protein 30 1.9
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 4.3
At5g42370.1 68418.m05159 expressed protein 29 4.3
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 4.3
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro... 28 5.7
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro... 28 5.7
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 5.7
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 28 5.7
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 28 5.7
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta... 28 7.6
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta... 28 7.6
At5g22390.1 68418.m02612 expressed protein 27 10.0
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 453 PGTGSIRFPSKPDTPRSSEPILIPKLRIQFAD 358
PG + FP KP+ P P +P+L + F D
Sbjct: 93 PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -1
Query: 240 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 106
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 179 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 69
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 42 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 173
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -1
Query: 462 STRPGTGSIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 343
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -1
Query: 462 STRPGTGSIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 343
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 235 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 137
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -3
Query: 376 TDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSPRTSLTEFSRSAESI 227
T LPL L Y L + D RI +G T PR + T F + S+
Sbjct: 289 TSLAAELPLVPLPYLLLPSYSADDPRILYSSGTTGPRNAQTRFQSNQSSV 338
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -3
Query: 376 TDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSPRTSLTEFSRSAESI 227
T LPL L Y L + D RI +G T PR + T F + S+
Sbjct: 289 TSLAAELPLVPLPYLLLPSYSADDPRILYSSGTTGPRNAQTRFQSNQSSV 338
>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 493 NSLKRT*RTNIDQTRHRQHPLPVQTRHAPVLRANPYSEVTDP 368
N K T TN T R +P P Q + P + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190
>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -3
Query: 493 NSLKRT*RTNIDQTRHRQHPLPVQTRHAPVLRANPYSEVTDP 368
N K T TN T R +P P Q + P + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 114 ERSGKSFLFCLSVRVPWNPIEG 179
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,092,083
Number of Sequences: 28952
Number of extensions: 375287
Number of successful extensions: 1104
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -