Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021849
         (794 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.9  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      21   8.6  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 280 LAPHQLVDAPLHLQRILQKQPKLLPFGTSPAYDI 179
           L PH+  D  L        QP   P GT+P +DI
Sbjct: 725 LTPHEAFDVKLPPPPHPHHQPPRNPVGTNP-HDI 757


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 280 LAPHQLVDAPLHLQRILQKQPKLLPFGTSPAYDI 179
           L PH+  D  L        QP   P GT+P +DI
Sbjct: 617 LTPHEAFDVKLPPPPHPHHQPPRNPVGTNP-HDI 649


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 650 HVVDFRSYVGKREKSF*KDGRQESYVQV 733
           HV+ +   V K   SF   GR  SY+QV
Sbjct: 48  HVLQYPGCVPKPIPSFACIGRCASYIQV 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,738
Number of Sequences: 336
Number of extensions: 3847
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)