Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021849
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.3  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    27   3.1  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    27   3.1  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   5.4  
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    25   9.4  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    25   9.4  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.4  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.4  
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    25   9.4  
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.4  

>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/34 (35%), Positives = 24/34 (70%)
 Frame = -3

Query: 114 WRKLGMRHTRKIKYVLESNKKFVSRLIFKEGERK 13
           +RK+ + + +K+KY+L+ N + + RL+ KE + K
Sbjct: 193 YRKI-LENGKKVKYLLDENGEILKRLVKKEKKLK 225


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 706 IFSKTFLSLSNIRPEVNYVLPCWKSFFLP*ETPSVA**RRRGWRIL 569
           I S   LS S   P +  +LP    F +  ET  +A  + RG++IL
Sbjct: 493 ILSSNSLSTSLTYPLIEIILPIKNGFLMGKETFQIAFKKSRGYQIL 538


>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 178 LYRTPVKYQTAAVLVVSGGSSANGEARLQAGVAR 279
           L+R P  +   +VLVV G SSAN   R    VA+
Sbjct: 203 LFREPELFVGESVLVVGGASSANDLVRHLTPVAK 236


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 185 RYSHFFCLV*NTIKLFLFRHARFVGASLE*DTRGKLNTF 69
           ++S + CLV + +KL   RH R+ G       +  L++F
Sbjct: 749 QFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQKSLHSF 787


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 562 NIVRYAILAYVITLQRVSLRVK 627
           ++VRYA+++  I+L RV ++ K
Sbjct: 229 DVVRYAVISGAISLDRVDVKTK 250


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 160 FKTLLNYFYLDTHVLLAQAWN 98
           F+++L Y YLDT+ +  + +N
Sbjct: 215 FESILRYLYLDTNAVFTKQYN 235


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 225 NNQNCCRLVLHRRTI 181
           NN NCCR +  RR++
Sbjct: 112 NNDNCCREIARRRSL 126


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +2

Query: 380 FGAQSESIPMSFVLGFYVSLVVKRWWEQYKLLPWPDTLALFISQAYLERSVKT 538
           + AQS  + + +   FY+++V  R      +  WP+     I    LE  V++
Sbjct: 28  YWAQSNLVELYYGESFYINIVCSRPIVDENVTTWPENEGFRIEGTLLESLVES 80


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 663 KSTTCCHVGNLSFY 622
           K + C +VGNLSFY
Sbjct: 29  KQSNCVYVGNLSFY 42


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 120 FCWRKLGMRHTRKIKYVLESNKKFV 46
           FC+R L       + Y   SN+ FV
Sbjct: 22  FCFRNLSQSSNNNVSYASSSNRNFV 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,959
Number of Sequences: 5004
Number of extensions: 67783
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)